PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115394.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 532aa    MW: 59845.8 Da    PI: 8.8683
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.3e-14251011597
                     -EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  15 rlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      l +p  f+++h  g ++   kt +l++  s ++W v++  ++ +    lt+GW++F+ a++L+ gD+++F+++g++ f  +v++f
  XP_009115394.1  25 YLNIPVAFFSKHveG-SNDHIKTAKLRTdASAKTWLVEM--DGLK----LTDGWEDFAVAHDLRIGDIIIFRHEGKMVF--HVTAF 101
                     589**********63.4444468888775888*******..6666....***********************9998888..87776 PP
2B3696.4e-22163256599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++++l+ +rl++pk fa ++g+++ ++k+++l +e+g+sW+++++y+ ++ +++ + GW++F+ +ng+ +g  ++F+l++ +++ +v+++ r+
  XP_009115394.1 163 HVTPSSLSCDRLYVPKGFAMSNGLDNMSGKEIVLLNEEGKSWNLNITYNESGMHTFVRPGWRRFCAENGISQGHHCTFELVR-KSAPPVLRLSRA 256
                     5788999999*********************************************************************998.888888888775 PP
3B363.33.7e-20279368899
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     s++l+ + l+l  kf++++g+kk  s +++l++e+g +W+v+l+   +s+r++l+ GWk F++ ng+k+gD ++Fkl++ ++ ++v+ ++++
  XP_009115394.1 279 SNSLRIDKLYLQMKFVTANGMKKGFS-EIILKNEWGGRWSVRLRQYASSNRTYLGPGWKTFCQVNGIKAGDPFMFKLVE-TGDKPVLLLCSS 368
                     67788899************999887.****************99********************************98.666689888875 PP
4B348.71.3e-15437530498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +++ ++lk++   lp  f++ +g++  +s++++l  ++g ++W v l  +k+ g++ ++kGW+e ++a+g+k+g++++++l++++e+ +v+k++
  XP_009115394.1 437 LTLTQNALKTSVQHLPLGFTRVNGIN--RSRKIMLLGKDGvKKWVVDLLKNKSTGAMRIRKGWRELCDAHGVKVGESFLLELIRDEEAIPVLKFC 529
                     56677888888889******999988..7889****************99999999*****************************9999999998 PP

                     - CS
              B3  98 r 98 
                      
  XP_009115394.1 530 T 530
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.67E-188106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-218105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.54711104IPR003340B3 DNA binding domain
CDDcd100176.81E-1512101No hitNo description
SMARTSM010194.0E-2114104IPR003340B3 DNA binding domain
PfamPF023623.5E-82697IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-22152253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21153253IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-17159246No hitNo description
PROSITE profilePS5086314.748159257IPR003340B3 DNA binding domain
SMARTSM010196.8E-28160257IPR003340B3 DNA binding domain
PfamPF023624.5E-20163256IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-17272368IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.931272368IPR003340B3 DNA binding domain
SMARTSM010194.9E-20273369IPR003340B3 DNA binding domain
CDDcd100176.49E-15278367No hitNo description
PfamPF023624.6E-19278368IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-17283368IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-15427530IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-15430529IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-12432529No hitNo description
PfamPF023621.7E-14434530IPR003340B3 DNA binding domain
PROSITE profilePS5086312.901434531IPR003340B3 DNA binding domain
SMARTSM010191.1E-20434532IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MAHQSLHSPT NPHFFQPLLP GFHTYLNIPV AFFSKHVEGS NDHIKTAKLR TDASAKTWLV  60
EMDGLKLTDG WEDFAVAHDL RIGDIIIFRH EGKMVFHVTA FGPSLCEFQY TSASSHNIND  120
VSDDDHTNKT VTGNSSGEKR KRVKKNPRTK EESSSDHSHF VAHVTPSSLS CDRLYVPKGF  180
AMSNGLDNMS GKEIVLLNEE GKSWNLNITY NESGMHTFVR PGWRRFCAEN GISQGHHCTF  240
ELVRKSAPPV LRLSRAEHDP KPAPESSLHH SYYVGSASSN SLRIDKLYLQ MKFVTANGMK  300
KGFSEIILKN EWGGRWSVRL RQYASSNRTY LGPGWKTFCQ VNGIKAGDPF MFKLVETGDK  360
PVLLLCSSNR GETPLECSDD VNSLSSDTSS GEESQESEEE SLEDDSRSKD CVEMEKRKSS  420
LRCKCSSSYS KHRFVRLTLT QNALKTSVQH LPLGFTRVNG INRSRKIMLL GKDGVKKWVV  480
DLLKNKSTGA MRIRKGWREL CDAHGVKVGE SFLLELIRDE EAIPVLKFCT KL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115394.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115394.10.0PREDICTED: B3 domain-containing protein REM17-like isoform X1
SwissprotQ84WP31e-156REM17_ARATH; B3 domain-containing protein REM17
TrEMBLM4E7E10.0M4E7E1_BRARP; Uncharacterized protein
STRINGBra024696.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-146B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]