PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113330.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 713aa    MW: 74928.9 Da    PI: 10.2522
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.3e-10194223130
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                      r++W++eEd+ l+ avk++G g+W++I+++
   XP_009113330.1 194 RKKWSAEEDLELIAAVKRHGEGSWALISKE 223
                      789************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.094189246IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-11189241IPR009057Homeodomain-like
SuperFamilySSF466892.09E-9190244IPR009057Homeodomain-like
SMARTSM007172.2E-5193244IPR001005SANT/Myb domain
PfamPF002494.5E-8194223IPR001005SANT/Myb domain
CDDcd116603.97E-8195238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MVDSNKKRKE FISEGDMATL LQRYDTTTIL KLLQEMAYYA EPKMDWNELV KKTSTGITCA  60
REYQLLWRHL AYRDSLLPMD DNALLQDDDS DMEFELEASP AVSVDAVTEA VAHVKVIAAS  120
YVPSESDIPE DSICEAPLTI NIPYGLQRRP QEPSDSYWSS RGMNITFPIS LQKAAEGHSG  180
NGLASNMGGP RKKRKKWSAE EDLELIAAVK RHGEGSWALI SKEEYEGEIT VAQLSQRWGS  240
IRRRGDLSNS STQSYQQRTE AANRALSLAV GNRVPSKKVA VGIPPVLTSG STTGAQGNGS  300
SLQGQQQAKP VVQAIPRAAT AVQTAKSRVT ARKPTSTLRA ELMVTANSVA TAACMSGLGT  360
AASVPKVEPG KSAAPALVSK VKSSQASLPR PSGISSSVMN VEPVKTASAA SLPRPSGISP  420
TLNAEPVKSA STASFPRPLG TISSSKAEPV KTALAAALPR PSGIISAPKA DLVKTGHAVS  480
LPRPSGITSS TKAELMKTAS AASSPRPESM PSAPKGEPLK SVSAATTKTQ VVGPLSARNA  540
ANGPFNKPSP MAPFSKGPTI QNISVPSRFA SSRLAPTQRV NATTVMPQNP SVGVAVTSSS  600
KPVGVQKEQT QGSRTSPLVT TTLQPNKTIS TNSVISAGKP VATHVDTPPS LMPKKDQVPQ  660
TCTDKSSLAK PPEKVSSSTV PLSVVAEPEP KPKDEASKGK SPDGATVTGT EQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191195KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113330.10.0PREDICTED: mucin-2-like
TrEMBLM4EGG80.0M4EGG8_BRARP; Uncharacterized protein
STRINGBra027882.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein