PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111333.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 553aa    MW: 62780.4 Da    PI: 5.0896
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111333.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.72.8e-2081376128
             NAM   6 rFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkya....tgkrknr.atksgyWkatgkdkev 92 
                     +F+Pt+ el++    + v+gk++++   i+++ ++y+  Pw L+  ++v+ +e+ew++F++r+k+       ++r++r + +sg+Wk++g   ++
  XP_009111333.1   8 HFKPTNFELLNILHWRLVRGKRCSF---ITDMqNLYERAPWLLQhvRHVRFRENEWFYFVRRNKRPGmqkaDSTRPSRtVGESGIWKTSGVVAQI 99 
                     7*********998889999999877...777769*********94337777999*******999755433367799996667************* PP

             NAM  93 lskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     ++++g++vg+k+ + f   +++ ++g  t W+mhe+ l
  XP_009111333.1 100 KNQDGANVGTKRHISFKakSATVKDGITTGWTMHEFVL 137
                     ****************94334668999*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.9963153IPR003441NAC domain
SuperFamilySSF1019411.06E-228152IPR003441NAC domain
PfamPF023652.5E-98137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MKGTRRSHFK PTNFELLNIL HWRLVRGKRC SFITDMQNLY ERAPWLLQHV RHVRFRENEW  60
FYFVRRNKRP GMQKADSTRP SRTVGESGIW KTSGVVAQIK NQDGANVGTK RHISFKAKSA  120
TVKDGITTGW TMHEFVLDEP WFQEVVLCRI RFYKRKDNAQ YAPRFLPIVI GRERGDSIHH  180
GVAAAAGEEL QYSNAPVETH EAQGMEQWTG SCSREVVSYL ARQQIMVQDS NYTILNGGGM  240
MQHQDFGSYG QHFSVNGRME KHLDFGSYGQ LSGEFLGQQQ DHILAGQATY VSHMEDHQQQ  300
SHNLLGGHGT DPSHSAQTME EDQQQWNGFW GPYSAQPYDQ GMMENQDFES SALGLAQNHQ  360
CSGQNNDLSA LSEPAAQQQH LGEGSNLSGP SQVQVMMNQA LVEQHYVPWS AQANDQYKEH  420
NNELPTVPME TQHQQHDNVI INSAAQLHLE AQDNVPLINE TMEAQATDLP VNQGIDESHG  480
GIVGSPTYRE LYQEFLGEEE MGSEMDNIWN DVLNEEWVQK LGKNTPEEEE AELIADLTNC  540
ETFESFLDSL LSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896210.0AC189621.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111333.10.0PREDICTED: uncharacterized protein LOC103836792
TrEMBLM4F5E80.0M4F5E8_BRARP; Uncharacterized protein
STRINGBra036304.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.13e-14NAC domain containing protein 3