PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109426.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 286aa    MW: 32470.4 Da    PI: 4.5923
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.6e-1858110355
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k++++  +q+++Le+ Fe ++++  e++++LA++lgL+ rqV vWFqNrRa++
  XP_009109426.1  58 KKRRLRVDQVKALEKNFELENKIEPERKTQLAQELGLEPRQVAVWFQNRRARW 110
                     45578899********************************************9 PP
2HD-ZIP_I/II122.62e-3957148192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl  +qvk+LE++Fe e+k+eperK++la+eLgl+prqvavWFqnrRAR+ tkqlEkdy  Lk++yd+l+++ ++L++++++L  +++
  XP_009109426.1  57 EKKRRLRVDQVKALEKNFELENKIEPERKTQLAQELGLEPRQVAVWFQNRRARWETKQLEKDYGLLKSQYDSLRHNFDSLRRDNDSLVLKIS 148
                     69************************************************************************************997776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.02E-1746114IPR009057Homeodomain-like
PROSITE profilePS5007116.89253113IPR001356Homeobox domain
SMARTSM003893.8E-1556117IPR001356Homeobox domain
PfamPF000462.7E-1558110IPR001356Homeobox domain
CDDcd000861.45E-1458114No hitNo description
Gene3DG3DSA:1.10.10.601.9E-1861120IPR009057Homeodomain-like
PRINTSPR000314.4E-68493IPR000047Helix-turn-helix motif
PRINTSPR000314.4E-693109IPR000047Helix-turn-helix motif
PfamPF021834.6E-16113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MKRLSNSDSM CGLISNSTDE QNPRGYGHNF HSMLNGYEED GTTVEEYSGN HHMGQSEKKR  60
RLRVDQVKAL EKNFELENKI EPERKTQLAQ ELGLEPRQVA VWFQNRRARW ETKQLEKDYG  120
LLKSQYDSLR HNFDSLRRDN DSLVLKISEL KAKINGEEDN NNNSKVTAES DISAVKEENV  180
PSSPPEFIEH STGFDYRRSF TDLCDLLPNS TALDGGSSDS CDSSAETSSE NGRLTPPPTV  240
TGGNFLQFVK TEQMEDHDDF LSGEEACCFF SDEQPPSLHW YSASDH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.40370.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109426.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109426.10.0PREDICTED: homeobox-leucine zipper protein ATHB-16-like
SwissprotQ940J11e-170ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLM4D2E20.0M4D2E2_BRARP; Uncharacterized protein
STRINGBra010642.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-161homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]