PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108952.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 176aa    MW: 19528.9 Da    PI: 6.9441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-182373256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +g+Wv+eIr+p+    + +r++lg+++ +e+Aa+a++ a  +++ge
  XP_009108952.1 23 CYRGVRKRS-WGKWVSEIRVPR----TgRRIWLGSYDAPEKAARAYDSALFCIKGE 73
                    8*****888.**********95....25***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-112373IPR001471AP2/ERF domain
SMARTSM003808.9E-342386IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-192381IPR016177DNA-binding domain
PROSITE profilePS5103221.6542380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-282381IPR001471AP2/ERF domain
CDDcd000187.08E-312482No hitNo description
PRINTSPR003672.0E-92435IPR001471AP2/ERF domain
PRINTSPR003672.0E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MPPSTPKSHL LSSSLEEDQK FKCYRGVRKR SWGKWVSEIR VPRTGRRIWL GSYDAPEKAA  60
RAYDSALFCI KGEKGAFNFP NDKKPQLPEG SVRPLSKHDI QTIATDYALS VASAPSSPTT  120
TVPATYQVPS HVPASSDASS ANEHYLPVDA TAESIYSVED LQLDNFLIMD WINNLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1524821574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108952.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893750.0AC189375.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048L11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108952.11e-129PREDICTED: ethylene-responsive transcription factor ERF015-like
RefseqXP_013720370.11e-129ethylene-responsive transcription factor ERF015-like
SwissprotQ6NLD55e-96ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLA0A078GA171e-127A0A078GA17_BRANA; BnaA08g12710D protein
TrEMBLA0A3P6BI081e-128A0A3P6BI08_BRACM; Uncharacterized protein
STRINGBra010258.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148991620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.12e-90ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]