PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101506.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 290aa    MW: 33340.1 Da    PI: 5.2471
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.64.8e-5361341128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeel+++yLk+kveg ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rdkky++g r+nr tk+gyWkatgkd++++
  XP_009101506.1   6 LPPGFRFHPTDEELIDYYLKRKVEGLEIEL-EVIPVIDLYKFDPWELPdKsFLPNRDMEWFFFCSRDKKYPNGLRTNRGTKAGYWKATGKDRKIT 99 
                     79****************************.99**************96435556888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++++vg +ktLvfykgrap g +t+W+mheyrl
  XP_009101506.1 100 CRSSSTVGYRKTLVFYKGRAPLGDRTSWLMHEYRL 134
                     *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-593159IPR003441NAC domain
PROSITE profilePS5100558.0726159IPR003441NAC domain
PfamPF023652.1E-287134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGSSSLPPGF RFHPTDEELI DYYLKRKVEG LEIELEVIPV IDLYKFDPWE LPDKSFLPNR  60
DMEWFFFCSR DKKYPNGLRT NRGTKAGYWK ATGKDRKITC RSSSTVGYRK TLVFYKGRAP  120
LGDRTSWLMH EYRLCDDESS SQGSQYFKGA FVLCRVAKKN ENKSNSKIQR NLSEQTLGSG  180
ESSGYSSRVT SPSRDGRVPF HSFVNPVSTE TDSSNIWISP DFILDSSKDY PQIQDVAPEY  240
FQDFDFPVFG NQDVDVRAST LNANVDQSID ESMQTGYWTN CWYDQTGLFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-49516216168NO APICAL MERISTEM PROTEIN
1ut4_B2e-49516216168NO APICAL MERISTEM PROTEIN
1ut7_A2e-49516216168NO APICAL MERISTEM PROTEIN
1ut7_B2e-49516216168NO APICAL MERISTEM PROTEIN
3swm_A3e-49516219171NAC domain-containing protein 19
3swm_B3e-49516219171NAC domain-containing protein 19
3swm_C3e-49516219171NAC domain-containing protein 19
3swm_D3e-49516219171NAC domain-containing protein 19
3swp_A3e-49516219171NAC domain-containing protein 19
3swp_B3e-49516219171NAC domain-containing protein 19
3swp_C3e-49516219171NAC domain-containing protein 19
3swp_D3e-49516219171NAC domain-containing protein 19
4dul_A2e-49516216168NAC domain-containing protein 19
4dul_B2e-49516216168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosettes leaves, cauline leaves and stems. {ECO:0000269|PubMed:24285786}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101506.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101506.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9LS241e-166NAC96_ARATH; NAC domain-containing protein 96
TrEMBLM4E8A60.0M4E8A6_BRARP; Uncharacterized protein
STRINGBra025012.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.11e-168NAC domain containing protein 96
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]