PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244236.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 441aa    MW: 49098.1 Da    PI: 4.6076
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244236.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.77e-30171462128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      +G+r+hP dee+v + Lkk++eg++ +   +i+++d y++ePw+L  +       + + w+ Fs++++kya++ r nr t++g+Wk tgk +e+
  XP_008244236.1  17 LRGLRYHPPDEEMV-NLLKKRMEGSQARP--IIPDIDFYNYEPWELAgRmlpDSPYQPRMWFSFSRHHHKYANSPRCNRLTEKGFWKITGKPREI 108
                     68************.99*******99665..8**************84344422336779*********************************** PP

             NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +s+  +++++  k+tL+f+ gr +k +kt Wv +ey l
  XP_008244236.1 109 KSRqlSESVTCKKRTLTFHLGRPSKQSKTGWVKQEYYL 146
                     **976666677789**********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-3211166IPR003441NAC domain
PROSITE profilePS5100534.07216166IPR003441NAC domain
PfamPF023654.8E-1219145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSSSSSTTTD AWVLDLLRGL RYHPPDEEMV NLLKKRMEGS QARPIIPDID FYNYEPWELA  60
GRMLPDSPYQ PRMWFSFSRH HHKYANSPRC NRLTEKGFWK ITGKPREIKS RQLSESVTCK  120
KRTLTFHLGR PSKQSKTGWV KQEYYLTSTA PGSNLSGLVL FRMKNKSADY KSDNKQQQDV  180
AIYDESADPA IGGDVASNSQ DDQAAANHKI LEAEAEQHLL GSGNHNDGEP GGFVSSDFDI  240
MQELCAQLGL EPPQLGNVPG TGDYLASNSD NQAAAIHPMT TEEEELLAFK ELERVLLGSG  300
NPDNGEPRSC VSSDMRQESC AQPGEDLDSP VPPPGPPELG NAPDVYNDSS LPNKNNIPNN  360
YDSKPISNTA SDFENQAKDE RIPEVYSQSE ENLQLFFRSL EVENYTLPSS ILYVEQGDVL  420
HANNYIGCNE SQYAALFPHS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-171417213174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244236.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244236.10.0PREDICTED: NAC domain-containing protein 59-like isoform X1
TrEMBLA0A251QIM10.0A0A251QIM1_PRUPE; Uncharacterized protein
STRINGXP_008244236.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1714827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.11e-25NAC domain containing protein 96