PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242807.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 290aa    MW: 32774.7 Da    PI: 8.5815
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242807.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-173076248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + WT+eEd++l+++v+ +G g+W+t +++ g+ R++k+c++rw +yl
   XP_008242807.1 30 NLWTPEEDLILKKYVETHGEGNWATMSQRSGLMRSGKSCRLRWKNYL 76
                     56*******************************************97 PP
2Myb_DNA-binding51.81.9e-1682127148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_008242807.1  82 RGHMSQEEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 127
                      7889******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1242476IPR017930Myb domain
SuperFamilySSF466894.77E-2928123IPR009057Homeodomain-like
SMARTSM007171.0E-142878IPR001005SANT/Myb domain
PfamPF002497.7E-163076IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-223183IPR009057Homeodomain-like
CDDcd001672.13E-123276No hitNo description
PROSITE profilePS5129424.77677131IPR017930Myb domain
SMARTSM007173.7E-1681129IPR001005SANT/Myb domain
PfamPF002499.4E-1582127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2384129IPR009057Homeodomain-like
CDDcd001671.03E-1185127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDKKRSSSSS SVVTWKPAAA NANTQAPKKN LWTPEEDLIL KKYVETHGEG NWATMSQRSG  60
LMRSGKSCRL RWKNYLRPNI KRGHMSQEEQ DLIIRMHKLL GNRWSLIAGR LPGRTDNEVK  120
NYWNTHLNKM SCPAAPKRKS SHLNKIVTNK KKKNKISSST ITTTCTDRTD DHHDQIQKKD  180
AIDFDHDHRQ EPNGSNLTSS ASCYYNDIND MVESPIFTSH HDCLQYLPTN LNATFLFDHD  240
EPFIASDAAS SSSYLDSFLF FEAFGSSAAA TAADMESVLP LACADHHLGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21291297106B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136152KRKSSHLNKIVTNKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242807.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242807.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A314Y1691e-176A0A314Y169_PRUYE; Transcription factor MYB82
STRINGXP_008242807.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.15e-62myb domain protein 82