PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241193.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 355aa    MW: 39533.8 Da    PI: 8.5798
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241193.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.33.4e-121151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+  r+ t+ kRr+ +lKK  EL +LCd++ ++i+++++
  XP_008241193.1 11 IVNDAARKATLRKRRANLLKKLRELTILCDVNGLIIVYGPD 51
                    779999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.629149IPR002100Transcription factor, MADS-box
CDDcd002661.48E-26285No hitNo description
SuperFamilySSF554551.83E-20293IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-5323IPR002100Transcription factor, MADS-box
PfamPF003198.0E-121151IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTRRKVKLAW IVNDAARKAT LRKRRANLLK KLRELTILCD VNGLIIVYGP DSDEPVVWPE  60
RPVVQELLAR FLSIPEFERW KKMTNQETYL KDSAAKIQEQ IRKIQKKNNE MEMNYIMHQI  120
LQNGKPLDAF HARELTDLVF FMKDKMKEIE KRIETKEMDP NVPLCAPSHN DEWNATESLF  180
NYLHKEKTKQ MENIVGASSS VRSDMGLPEY TFFGSSVNPA NGIGFPSVNF EGNYSYGGSD  240
LGLPKQIHNI AGSSSSVRRH GTDLGMPHVN YGGSSTGGSE MRHDMLPHYY GDNIVGNTGW  300
GTRGTNAGYG DRLGHLPQQL SVEGDKGSGL GLPAGLFGGN NGGSDAGLPY DVSKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKLAWIVNDAARKATLRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241193.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241193.10.0PREDICTED: uncharacterized protein LOC103339639
TrEMBLA0A251N9540.0A0A251N954_PRUPE; Uncharacterized protein
STRINGXP_008241193.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-22AGAMOUS-like 80