PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240892.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 292aa    MW: 31985.3 Da    PI: 8.4173
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240892.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049226248223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg  Fs+  +L+ H  + H
  XP_008240892.1 226 ECPQCGAKFSSVTTLVDHVEKvH 248
                     5*****************99888 PP
2zf-C2H215.83.9e-05265286323
                     ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                     Cp+C+k F+++  L+ H  + H
  XP_008240892.1 265 CPKCSKGFRDPVALVEHVERdH 286
                     *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183108.37E-12459No hitNo description
PROSITE profilePS510397.7281056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.0E-101154IPR000058Zinc finger, AN1-type
PfamPF014281.6E-131351IPR000058Zinc finger, AN1-type
SMARTSM001545.1E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.7E-1191150IPR000058Zinc finger, AN1-type
SuperFamilySSF1183108.24E-993144No hitNo description
PROSITE profilePS510397.98298146IPR000058Zinc finger, AN1-type
PfamPF014282.0E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.017101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.369225248IPR007087Zinc finger, C2H2
SMARTSM003550.042225248IPR015880Zinc finger, C2H2-like
PfamPF138944.0E-4226248No hitNo description
PROSITE patternPS000280227248IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-4229248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.829263291IPR007087Zinc finger, C2H2
SMARTSM003557.1263286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGTPEFPDLG RHCYVADCQQ IDFLPFTCDS CHQVFCLEHR SYIKHNCPKA DRQNVTVVIC  60
PLCAKGVHLI PDEDANITWE RHVNAECDPS NYEKATKKKK CPVPGCKELL TFSNTIKCRD  120
CTVDHCLKHR FGPDHKCPGP KKPTAGFPFS GLLSRSRKEV SKPNHAPAAS SSKWSNSFLT  180
AASSFRASAE ASVAKLSSEL SQKWQIAKDG VGQSSSSGSR NGQLEECPQC GAKFSSVTTL  240
VDHVEKVHEK GSNRAGVKKM TIDACPKCSK GFRDPVALVE HVERDHGGTS RA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240892.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240892.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ8VZ421e-127SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLM5VQL80.0M5VQL8_PRUPE; Uncharacterized protein
STRINGXP_008240892.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-123C2H2 family protein