PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008240070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 285aa MW: 31495 Da PI: 6.3723 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.2e-20 | 129 | 178 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +grW+AeIrdp+ r kr++lg+f+taeeAa +++a+ l+g XP_008240070.1 129 KFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTFDTAEEAATVYDRAAVLLKG 178 89*******.**********84....34*********************977766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 5.8E-72 | 9 | 284 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
Gene3D | G3DSA:3.30.730.10 | 2.2E-30 | 129 | 187 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.77E-32 | 129 | 188 | No hit | No description |
PROSITE profile | PS51032 | 24.329 | 129 | 186 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-37 | 129 | 192 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-12 | 129 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-22 | 129 | 187 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-10 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MTSFQTISSV NPMVKFSEQV TTMTKLITHE NQNSPVNPTH LPPKLVRIIL TDADATDSSS 60 DEEDSGVRRV KRHVRQISLE LSSPSSSSSP SSSSSSFSSG HSKRLRKGQR PTKKLGSRSP 120 GSDQTRRNKF RGVRRRPWGR WAAEIRDPTR RKRVWLGTFD TAEEAATVYD RAAVLLKGPD 180 AVTNFPNAAM TEATVVTDVV VPAAEESYGC GSSTPNEAAT SPTSVLRYDE LTPFDGFRYG 240 EVDAFGFDID LPLSLPDIML SNNNNFAHDE FGEFDVNDFW VDVIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-21 | 116 | 187 | 4 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 152 | RRRPWGRWAAEIRDPTRRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008240070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT369555 | 0.0 | KT369555.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008240070.1 | 0.0 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | O04682 | 4e-62 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A251NJX4 | 0.0 | A0A251NJX4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240070.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 1e-28 | cytokinin response factor 3 |