PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008239108.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | AP2 | ||||||||
Protein Properties | Length: 474aa MW: 51984.7 Da PI: 7.1611 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.3e-17 | 140 | 189 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_008239108.1 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 189 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.1 | 2.1e-13 | 232 | 282 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_008239108.1 232 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEIEAARAYDKAAIKCNG 282 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.3E-9 | 140 | 189 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-16 | 140 | 199 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.649 | 141 | 197 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.81E-12 | 141 | 199 | No hit | No description |
SMART | SM00380 | 1.6E-32 | 141 | 203 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-17 | 141 | 198 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-9 | 232 | 282 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-16 | 232 | 291 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.71E-25 | 232 | 290 | No hit | No description |
PROSITE profile | PS51032 | 15.58 | 233 | 290 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-31 | 233 | 296 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-16 | 233 | 290 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-6 | 234 | 245 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-6 | 272 | 292 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MLDLNLSFVC NDVVSSSDNN LLHLPATTSP IQSSASFNSS SNLTAAGDDE DSSTLNFLSP 60 NDVAADDNAH CDARTIQLFP LAQSVLSSSS SSSSSRKQWL GLSSNSGLEV EPSYYAPAEQ 120 IVPLQQKVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY 180 DRAAIKFRGT EADINFNVSD YEDDIKQMSN FTKEEFVHIL RRQSTGFSRG SSKYRGVTLH 240 KCGRWEARMG QFLGKKYVYL GLFDSEIEAA RAYDKAAIKC NGREAVTNFE PNSYDGQIMS 300 EAHNGGSDKS LDLNLGIAPP SVSELQKNNS NLSSFPVQLG CDDIPIHMRT RNENSAPAPM 360 RAQLSHGSMV ASEEPPIMSN INSSFFPIQV ERATEKRMDV NSFPNWAWQL QGLNGGATPM 420 PLFSAAASSG FPSSTATSPP AAVTQLHFPN TTILHHHFSP STVTNNIPGF YCRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008239108.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008239108.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Swissprot | Q8H443 | 1e-113 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | M5VY07 | 0.0 | M5VY07_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239108.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10581 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-100 | related to AP2.7 |
Publications ? help Back to Top | |||
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