PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239060.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 310aa    MW: 33312.7 Da    PI: 9.5439
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239060.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.2e-123361347
                     HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      ++v+++G+++W++I++ ++ gR++k+c++rw + 
   XP_008239060.1  3 QRLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 36
                     579*****************.***********985 PP
2Myb_DNA-binding55.61.2e-174587347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ 
   XP_008239060.1 45 AFTPEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 87
                     79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.54137IPR017930Myb domain
SuperFamilySSF466893.74E-25184IPR009057Homeodomain-like
SMARTSM007177.2E-4139IPR001005SANT/Myb domain
CDDcd001671.33E-10135No hitNo description
Gene3DG3DSA:1.10.10.601.2E-19244IPR009057Homeodomain-like
PfamPF002495.0E-12236IPR001005SANT/Myb domain
PROSITE profilePS5129423.7233892IPR017930Myb domain
SMARTSM007179.2E-154290IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-234591IPR009057Homeodomain-like
CDDcd001674.29E-124588No hitNo description
PfamPF002492.2E-154587IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
ALQRLVQKHG PRNWSLISKS IPGRSGKSCR LRWCNQLSPQ VEHRAFTPEE DDTIIRAHAR  60
FGNKWATIAR LLNGRTDNAI KNHWNSTLKR KCSDIGVVFP GGGVGGSGGY DGHFLHDHEQ  120
PPLKRSVSAG SGMPVSTGLY MSPGSPSGSD MSDSSVVPVM SLSECHVYRP VARSGGVLPL  180
AETTSSSNDN NSNNVKQKEN DPTTSLSLSL PGVDSGEVSN RVAAIELTQA PVPVPVPIPI  240
QNPVPDPAPA RAPFQNIPVE LLAVMQGMIR KEVRSYMAGL EQSGICMQQA ANNDGFRNVA  300
VKRIGVSRIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-3449217105C-Myb DNA-Binding Domain
1msf_C5e-3449217105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6222510.0JQ622251.1 UNVERIFIED: Prunus cerasus cultivar VN-1 MYB-like (MYB) mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239060.10.0PREDICTED: transcription factor MYB44, partial
SwissprotO231603e-93MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A251NUE41e-180A0A251NUE4_PRUPE; Uncharacterized protein
TrEMBLM5W0251e-180M5W025_PRUPE; Uncharacterized protein
STRINGXP_008239060.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.16e-75myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]