PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237709.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 360aa    MW: 41009.3 Da    PI: 9.5448
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237709.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.9e-181560147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
   XP_008237709.1 15 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60
                     899*****************************.***********996 PP
2Myb_DNA-binding58.71.3e-1867110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
   XP_008237709.1  67 RRPFSEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 110
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5171061IPR017930Myb domain
SuperFamilySSF466892.36E-2914108IPR009057Homeodomain-like
SMARTSM007178.4E-151463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-271668IPR009057Homeodomain-like
CDDcd001677.60E-141859No hitNo description
PfamPF139212.1E-171878No hitNo description
PROSITE profilePS5129427.44162116IPR017930Myb domain
SMARTSM007174.9E-1666114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2169114IPR009057Homeodomain-like
CDDcd001671.27E-778109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDDYGDEAKS TTCPRGHWRP AEDEKLRQLV EQYGAQNWNS IAEKLQGRSG KSCRLRWFNQ  60
LDPRINRRPF SEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV IMARRQREQS  120
KVCGKRSYQD FCNDHSSNTS SISNNFDVSR KFKSQGELRS SSSIGFDQNS GTKFFEFRNP  180
NKDRTTMFMD SRHASSSPYN WNFATMSTTS NNAASSSVGL LGRERRDYFN NVSSNNNISG  240
CSKGLDHQFV HRRNNPTTSS FMYGSYIGST SAFGLPNYKR VNVPSPFGCL GLGDHINRPE  300
QHGRTFKKEL ANFCDNASTL AKWRVAATAK FGDHDCQDHE SIDHHKETPF IDFLGVGISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31151157107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237709.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237709.10.0PREDICTED: transcription factor MYB44-like
TrEMBLA0A315AEA10.0A0A315AEA1_PRUYE; Transcription factor MYB44-like
STRINGXP_008237709.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.15e-62myb domain protein 52