PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237504.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 464aa    MW: 50151.4 Da    PI: 6.5156
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237504.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.1e-20233282255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  XP_008237504.2 233 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 282
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-14233282IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22233291IPR016177DNA-binding domain
PROSITE profilePS5103225.712233290IPR001471AP2/ERF domain
SMARTSM003803.0E-37233296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-33233291IPR001471AP2/ERF domain
PRINTSPR003671.4E-11234245IPR001471AP2/ERF domain
CDDcd000188.18E-15241292No hitNo description
PRINTSPR003671.4E-11256272IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MCLLKVANQR SSGGQYDRFE SSNDDDHGEE AYTYEEQPQA AARNIDHELM NQLPHQNVSP  60
TMFLGYSRPT EMSAMVSALT HVVSGQRGSD SWGHIGGGGV TSSFGQLYSS SSCASPSASP  120
LSAFSSTSGP SPSGSHNWVG QKRGREEDLA AAAAAAQAQF MESANRVYRG SYGDFRATTQ  180
AESSSGATVT EEATNAVTTT TTASAATAAS AVPSTPSSSE TVSFEEPGER RRRYRGVRQR  240
PWGKWAAEIR DPHKAARVWL GTFDTAEAAA RAYDEAALRF RGNRAKLNFP ENVRLVHPQP  300
QAPNLQNFNS DSARTNLAPI LSAQPLQPPP QPPQQLYQPQ PFHGSSDFLR DYFDYSQLLQ  360
SSTNFHAQQQ QQQQQPTNLL QQMYYNSQLA SLQSSLLNPP SSSSSSSTLP SSASASASFP  420
LFFSDQNQQL GFFRPPRNQT NPGGSSDFPA PPWSQSGNNP SSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22234293666ATERF1
3gcc_A1e-22234293666ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237504.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237504.20.0PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A314UL540.0A0A314UL54_PRUYE; Ethylene-responsive transcription factor ABR1
STRINGXP_008237504.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.12e-16ERF family protein