PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236526.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 415aa    MW: 46336.7 Da    PI: 4.6954
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236526.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-1869158299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +kv++ps+v+   +l lpkkf+ eh   +++++++ lede+g+++e k+     +  + l++GW++F  a++L egD++vF+l+  s+f  +v +
  XP_008236526.1  69 LKVMLPSHVTGGFWLGLPKKFCCEHL--PKQDIMIALEDENGEEFETKY--LADK--VGLSGGWRGFSIAHKLVEGDVIVFHLVTPSKF--KVYI 155
                     699*******************9995..34889****************..4444..45***********************9987888..8888 PP

                     E-S CS
              B3  97 frk 99 
                     +r+
  XP_008236526.1 156 VRS 158
                     775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-2061159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-2461160IPR015300DNA-binding pseudobarrel domain
CDDcd100173.62E-2766157No hitNo description
PROSITE profilePS5086312.66168159IPR003340B3 DNA binding domain
SMARTSM010196.3E-2168159IPR003340B3 DNA binding domain
PfamPF023622.1E-1669158IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MFRKKSSSLT QSQTTKSIVV SANPMMPESH KRKRATVESI YDTSQAQSSV LERAQEVEVS  60
LDPKFPSLLK VMLPSHVTGG FWLGLPKKFC CEHLPKQDIM IALEDENGEE FETKYLADKV  120
GLSGGWRGFS IAHKLVEGDV IVFHLVTPSK FKVYIVRSNG LDEFDGALGL MRLDACKKMD  180
TGDTIACERE ESETLEPISE DNAIAFDTKS CPISDHSESE SGDVGFEVLD GLRLSESVVT  240
FEEVKCMDDF NVLVNGLIIN SEFSKYILNK YYELCCSQTS FLHEHLLEGL NCKLVAGVIS  300
ETVNIADAIR ACNITTPEGN FSTWDQTLKA FQGLGMNIGF LLARLDQLVS LASKSKRFKE  360
ARLEKDHAEE DMRSLEAKLL EVKEAVSRLE SEIETLNTSS ENHELMFQEV AKASW
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236526.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236526.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A251MWS70.0A0A251MWS7_PRUPE; Uncharacterized protein
TrEMBLA0A251MWU40.0A0A251MWU4_PRUPE; Uncharacterized protein
STRINGXP_008236526.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-44B3 family protein