PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008235718.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 215aa MW: 24169.2 Da PI: 6.6117 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 34 | 56 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H XP_008235718.1 34 YECVFCKRGFTTAQALGGHMNIH 56 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.41E-6 | 32 | 61 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 32 | 60 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.427 | 34 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 36 | 56 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEHHDHQVSK SSSTDEEADQ RSDANDGVGT GRSYECVFCK RGFTTAQALG GHMNIHRRER 60 APKTRPSSAP NLSSSISKSV DDHNHPGLRS YREIQSYPPH YSTAPDHDQV VVDHHVNYRT 120 FMPAPTGSWV VRPSPHANYV SEEDLCARNY IPRHRNLLTD DHRDWRSGSS LSLGIGRPSH 180 DLDNNKDRVA NGAGSDEELD LELRLGHDPL YNIKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008235718.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ418473 | 1e-41 | HQ418473.1 Malus x domestica transcriptional regulator superman (SUP9a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008235718.1 | 1e-159 | PREDICTED: probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | M5VK16 | 1e-155 | M5VK16_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235718.1 | 1e-159 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 2e-13 | C2H2 family protein |