PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008233950.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bZIP

Protein Properties

Length: 376aa MW: 42706 Da PI: 6.9752

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008233950.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.9	6.9e-11	80	130	3	50
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNkaLkkele 50 ++k++rr+++NReAAr+sR RKka++++Le+ k ++Le+e ++ +k+++ XP_008233950.1 80 SDKVQRRLEQNREAARKSRMRKKAYVQQLETsrlKLAQLEQELDRARKQIN 130 79****************************855566777777666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-10	75	131	No hit	No description
SMART	SM00338	1.2E-7	78	142	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.91	80	137	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.1E-8	80	124	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.06E-7	82	130	No hit	No description
PROSITE pattern	PS00036	0	85	100	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.0E-26	180	253	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MLQERMSYPS TQFATSRQMG IYEPFRQVGV WKETFRGDHS SNTGASSILE VDAGIETKIG 60 YVSHESLAPS GNDQEPNRSS DKVQRRLEQN REAARKSRMR KKAYVQQLET SRLKLAQLEQ 120 ELDRARKQIN RRLPDLQGAY VASSLGTSHM GYNGALNSGI TTFEMEYGHW VEEQHRQNVE 180 LRNALQDHGT DIELLRILVE SGLSHYANLF RMKADAARAD AFYLLSGIWR TSVERHFHWI 240 GGFRPSELLN IVLPQLQPLD DPQFVDFCNL RQSSQQAEDA LTQGMEKLQQ NLALTIAGDQ 300 ISGESYGSQM ATALEKLEAL ETFVGQADHL RQQTLQQMSR ILTTHQAARG LLALGEYFHQ 360 LRALSSLWTA RPRELT

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MLQERMSYPS TQFATSRQMG IYEPFRQVGV WKETFRGDHS SNTGASSILE VDAGIETKIG  60
YVSHESLAPS GNDQEPNRSS DKVQRRLEQN REAARKSRMR KKAYVQQLET SRLKLAQLEQ  120
ELDRARKQIN RRLPDLQGAY VASSLGTSHM GYNGALNSGI TTFEMEYGHW VEEQHRQNVE  180
LRNALQDHGT DIELLRILVE SGLSHYANLF RMKADAARAD AFYLLSGIWR TSVERHFHWI  240
GGFRPSELLN IVLPQLQPLD DPQFVDFCNL RQSSQQAEDA LTQGMEKLQQ NLALTIAGDQ  300
ISGESYGSQM ATALEKLEAL ETFVGQADHL RQQTLQQMSR ILTTHQAARG LLALGEYFHQ  360
LRALSSLWTA RPRELT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008233950.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008233950.1	0.0	PREDICTED: transcription factor TGA7 isoform X1
Swissprot	Q93ZE2	1e-149	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A314YFX2	0.0	A0A314YFX2_PRUYE; Transcription factor TGA7 isoform X1
STRING	XP_008233950.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-151	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]