PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231690.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 350aa    MW: 38779 Da    PI: 10.1372
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231690.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.26.6e-1648131186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  v  L+ea++ ++   +r+klk+++We+v+k++      ++  ++++qCk+k+e+++kry+ + +++ +      s++p++ +l+
  XP_008231690.1  48 EWSEGAVSSLLEAYETKWVLRNRAKLKGHDWEDVAKHVssraNCTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 131
                     5*************************************854444555566679****************99997......4699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-2046131No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDNETNQENP SLPPNNYTST TKELESPRSK PQQPLGVGGS SDRLKRDEWS EGAVSSLLEA  60
YETKWVLRNR AKLKGHDWED VAKHVSSRAN CTKSPKTQTQ CKNKIESMKK RYRSESATAD  120
GSSWPLYPRL DLLLRGSGPS PTAASAAATV TAAAIPPPPL PPPLPVQLHP PPPQNNHPLM  180
LLEPSASLPP QPPPTAPPQP IGTAQNSYGS NGVDHRVAKE DGMGMKLSDH ASDKNPLEID  240
SSTPALYSDK EKLRSKRMKR KIEKKKRRRR EEVEIAESIR WLAEVVVRSE QARMDTMREI  300
ERMRVEAEAK RGEMDLKRTE IIANTQLEIA RLFAAGVGKG VDSSLRIGRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268KKKRRR
2263269KKKRRRR
3264269KKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8532031e-165AB853203.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH155.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231690.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLM5X0480.0M5X048_PRUPE; Uncharacterized protein
STRINGXP_008231690.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.17e-59sequence-specific DNA binding transcription factors