PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229916.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 692aa    MW: 79726.5 Da    PI: 6.3952
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229916.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1767.8e-2471162190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC akl ++ke      +w+v+++++ HnHel 
  XP_008229916.1  71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCGAKLYLTKEIvdgVMQWYVSQFSNVHNHELL 162
                     69********************8888.******************************************998766779*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2171162IPR004330FAR1 DNA binding domain
PfamPF105511.0E-24294387IPR018289MULE transposase domain
PROSITE profilePS509669.693566601IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-7571598IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-4576603IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MAMKPSNNIW IRRQQCPCGD WKCYIQYEGD DLGSVSSQHV KSETTPSSSS SEAVFTPYVG  60
QIFKTDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CGAKLYLTKE IVDGVMQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEVD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLNEK  240
RENDMLELLE ACKAMTGRDP DFVYDYTIDE NEKVENIAWS FGDSIRAYTI FGDVVAFDTT  300
YRSVTYGLLL GVWFGIDNHG KAIFLGCVLL QDESSHSFAW ALQAFMRFMR GRHPQTILTD  360
IDSGLRDAIA RELPNTKHVL CIWHILSKIS SWFSLPLGSQ YENFKTEFDM LSQLESVEDF  420
EHQWNILVAR FGLVSDKHIA LLYSYRASWT FSYIRSYFLA RTLTAEFSLS LESFLKRILN  480
GQTCLQVFFE QVSIAANLEN QTREGMQYMH VKTGMPLEEH ARNILTPYAF NVLQHEIVLS  540
VQYATTEMAN GSYLVRHYKK LDGECLVIWM PDDEQIHCSC KEFEHSGILC RHSLRVLVVK  600
NYFQLPEKYF PLRWRVESSL VSVDDQNAQI SSDGGAQAFH SLTASLLTES LISKDRFNYV  660
HNELTSLLEH VRNMPVIDEY AANAAANNIS EL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229916.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229916.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLM5WX170.0M5WX17_PRUPE; Uncharacterized protein
STRINGXP_008229916.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]