PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228764.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 311aa    MW: 33621.5 Da    PI: 9.4322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228764.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026116138123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_008228764.2 116 FSCNYCQRKFYSSQALGGHQNAH 138
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-6113144No hitNo description
PROSITE profilePS5015711.427116143IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MKPQTSDPIS LLKISSIIPV SEAPKLSPSL NEVSIMETQK PQMQPAQDYH QEHPPQAPNT  60
DILLDLSLSN KEPDHGSNPE LNLINCFDSN ASGNSSPETS SPKGTTAHDA AEPRVFSCNY  120
CQRKFYSSQA LGGHQNAHKR ERTLAKKGYK SNCTAASSDA LVRLPSLLSH RFSSMASLPL  180
HGSFNRSLGV QVHSTIHKPC YQLSNTFGST NTSPYGGHNS NSNGCLRKSL DQQPAIRRLV  240
VPQNNVFHVQ GGVGSSSSSS SGGVGRFVNS TSVRKFSPVT EGIGGLWRNS SVGHFKTKQD  300
ELQNLDLSLK L
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228764.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228764.20.0PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 1
TrEMBLM5XFR50.0M5XFR5_PRUPE; Uncharacterized protein
STRINGXP_008228764.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.17e-39zinc-finger protein 1