PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008227154.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | Trihelix | ||||||||
Protein Properties | Length: 449aa MW: 51178.4 Da PI: 6.2516 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.7 | 5.7e-22 | 122 | 218 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt++ v++Li+++ ++++ ++ +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d XP_008227154.1 122 KWTDNVVRLLIAIVACVGDDGTLESgeglkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMD 216 7**************555554432223555666888**********************************************6699999998888 PP trihelix 84 ql 85 ++ XP_008227154.1 217 SM 218 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.2E-19 | 120 | 245 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MDSSGLGGGF LSGPSGGILD LESSIPRRQE IQLGHPLLAH HQHHMNVMSG VKGDHDPIGL 60 VEVKGSIPKV CSTTVKGKAV APFNANNGYN LSDEDEPSYT DDGGENFEGA KGKKGSPWQR 120 MKWTDNVVRL LIAIVACVGD DGTLESGEGL KRKSGILQKK GKWKTVSKIM ISKGCHVSPQ 180 QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPH LSAKAKDDVR KILSSKHLFY 240 KEMCAYHNGQ RIPDCHDLDL QGYSLPLGRG SKDNNGSDEE EAEENHDTED DELDNEDDND 300 ADNDRERMRR MGDRKKASEE DVHFWPQYVL DSFEVEMGEI FQDPTKSLWE RRDWIKKQKL 360 QLQEQRVGFQ AEALELEKQR YKWLRYCSKK DRELERLRLE NERMKLENER KLLHLRQKEL 420 EIDLRRSDAS LEPSSLGLGR DQIDLGRHQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 304 | 315 | RERMRRMGDRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008227154.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008227154.1 | 0.0 | PREDICTED: uncharacterized protein LOC103326696 | ||||
TrEMBL | A0A251PQA7 | 0.0 | A0A251PQA7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008227154.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 8e-72 | sequence-specific DNA binding transcription factors |