PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227154.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 449aa    MW: 51178.4 Da    PI: 6.2516
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227154.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.75.7e-22122218185
        trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     +Wt++ v++Li+++  ++++   ++           +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d
  XP_008227154.1 122 KWTDNVVRLLIAIVACVGDDGTLESgeglkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMD 216
                     7**************555554432223555666888**********************************************6699999998888 PP

        trihelix  84 ql 85 
                     ++
  XP_008227154.1 217 SM 218
                     87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-19120245No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDSSGLGGGF LSGPSGGILD LESSIPRRQE IQLGHPLLAH HQHHMNVMSG VKGDHDPIGL  60
VEVKGSIPKV CSTTVKGKAV APFNANNGYN LSDEDEPSYT DDGGENFEGA KGKKGSPWQR  120
MKWTDNVVRL LIAIVACVGD DGTLESGEGL KRKSGILQKK GKWKTVSKIM ISKGCHVSPQ  180
QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPH LSAKAKDDVR KILSSKHLFY  240
KEMCAYHNGQ RIPDCHDLDL QGYSLPLGRG SKDNNGSDEE EAEENHDTED DELDNEDDND  300
ADNDRERMRR MGDRKKASEE DVHFWPQYVL DSFEVEMGEI FQDPTKSLWE RRDWIKKQKL  360
QLQEQRVGFQ AEALELEKQR YKWLRYCSKK DRELERLRLE NERMKLENER KLLHLRQKEL  420
EIDLRRSDAS LEPSSLGLGR DQIDLGRHQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304315RERMRRMGDRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008227154.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227154.10.0PREDICTED: uncharacterized protein LOC103326696
TrEMBLA0A251PQA70.0A0A251PQA7_PRUPE; Uncharacterized protein
STRINGXP_008227154.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.18e-72sequence-specific DNA binding transcription factors