PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226674.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 415aa    MW: 46384.2 Da    PI: 8.4927
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226674.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.5e-07233255123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  nL+ H+r H
  XP_008226674.1 233 HYCQVCGKGFKRDANLRMHMRAH 255
                     68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.02E-6231259No hitNo description
PROSITE profilePS5015712.653233260IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-6233260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034233255IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
SMARTSM0035582301334IPR015880Zinc finger, C2H2-like
SMARTSM0035522339361IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MISGATSNCF QTMPQQQEDE HQGLQIFSMT EDPQVSSFST SSGPENHSTS LLYSLSVLKE  60
KVRQAKSLFS ILISPDHHHH QSQPPESTSM TIASMNNVIQ EIIVTASSMM FTCQQMALVS  120
SSPPPPGNNN PTSTSNTIDH EEQLLHHQGL NKPPPPPRFS QPNFGSGPDN KIDTPFYPTN  180
DDQALDWFSD SYIDCTTRDT KTRHVQGIQL PISPKSFDII ELEAADLLAK YTHYCQVCGK  240
GFKRDANLRM HMRAHGDEYK TTVALSNPMK KNNSTTNNNN NHGAGGTDGN TDCSTNLPRK  300
YSCPQVGCRW NQKHAKFQPL KSMICVKNHY KRSHCPKMYV CKRCNRKQFS VLSDLRTHEK  360
HCGDLRWQCS CGTTFSRKDK LMGHVALFTG HTPVVISSLA SRLGKADQRS HGSQM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226674.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226674.10.0PREDICTED: zinc finger protein STOP1 homolog
TrEMBLA0A251NNT20.0A0A251NNT2_PRUPE; Uncharacterized protein
STRINGXP_008226674.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-104C2H2 family protein