PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008225579.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 266aa MW: 28827.3 Da PI: 6.9404

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008225579.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.4	4.3e-42	8	106	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh+++Gasnv k+l++l++ +reda++sl+yeAear+rdPvyG+vg+i+ lq +l+q +++l XP_008225579.1 8 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHRVYGASNVAKILNELNTAHREDAVTSLAYEAEARLRDPVYGCVGFISILQGKLKQIQTDLY 102 7*******************************************************************************************998 PP DUF260 96 llke 99 +k+ XP_008225579.1 103 NAKK 106 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.737	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-41	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MSSNTHSPCA ACKFLRRKCT QECVFAPYFP PDQPQKFANV HRVYGASNVA KILNELNTAH 60 REDAVTSLAY EAEARLRDPV YGCVGFISIL QGKLKQIQTD LYNAKKDLSA YIGPQALMIP 120 VFHPSQQTDV NASMPMLGIS NCPPPQHGCG GGQLMQQQQQ LFEAHQQELV RYNVNGMDAA 180 AANSVTGNGF NQMHAAAGTN GVVSAGSLGL GGGFDNNPYN HQIQPQQAAA AAAHHQHSLD 240 YQLQAQLMLQ PHQAQQSQLK SEGEES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-47	7	111	10	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-47	7	111	10	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008225579.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008225579.1	0.0	PREDICTED: LOB domain-containing protein 6-like
Swissprot	Q9FKZ3	9e-69	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	M5WIQ1	1e-157	M5WIQ1_PRUPE; Uncharacterized protein
STRING	XP_008225579.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-64	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]