PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008224697.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23209.3 Da PI: 5.5967 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.4 | 5.2e-43 | 49 | 148 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la XP_008224697.1 49 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQDLPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQAQLA 143 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_008224697.1 144 KAQAE 148 *9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.238 | 48 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-43 | 49 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MECSNETMNT NYTTTSSTPL SQSPSSSPSS PPPPLPPTPT PNPPVVISPC AACKILRRRC 60 ADKCVLAPYF PPTEPAKFTI AHRVFGASNI IKFLQDLPES QRADAVSSMV YEASARIRDP 120 VYGCAGAICH LQKQVNELQA QLAKAQAELV NMQCQQANLV ALICMEMTQS NEQGSPQQSL 180 DHNFIASSHG SNQSNLSFLD DTTTLGSLWE PLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 41 | 156 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 41 | 156 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008224697.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008224697.1 | 1e-158 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 2e-78 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A251NML0 | 1e-122 | A0A251NML0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008224697.1 | 1e-157 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-70 | LOB domain-containing protein 11 |