PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223733.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23124.9 Da    PI: 9.0797
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223733.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF633.3e-201563149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ien+  r +tfskRr gi KKA+EL  LC+aev v++fs++gk y y
  XP_008223733.1 15 KKIENEDDRLITFSKRRSGIYKKASELAALCGAEVGVVVFSPKGKPYSY 63
                    68*******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.988767IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-28766IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-26881IPR002100Transcription factor, MADS-box
CDDcd002656.98E-32877No hitNo description
PRINTSPR004046.1E-21929IPR002100Transcription factor, MADS-box
PfamPF003194.7E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-212944IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-214465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEGKRTRGRQ KIDIKKIENE DDRLITFSKR RSGIYKKASE LAALCGAEVG VVVFSPKGKP  60
YSYGSPAIEY VANRFLNVVA DQNADERISH GILEVYRQAR VYEANENHNE LVGQLEAVKE  120
RSKVLQQLVG EKGSGEQQCW WETALHNQDS QGVKKIHESF KGLVNHVCTH LRLRYGSGSN  180
NFDNGIASSS AALPFHATVG SNPNSQSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223733.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223733.11e-154PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A314Z2901e-142A0A314Z290_PRUYE; Agamous-like MADS-box protein AGL29
STRINGXP_008223733.11e-154(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-38AGAMOUS-like 64