PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223294.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 730aa    MW: 83658.4 Da    PI: 6.9405
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223294.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.61.3e-2053146190
            FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     +fY+++Ak++GFs+r+++++ +    + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w+vt +++ HnHel 
  XP_008223294.1  53 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNHELL 146
                     6***************9998874556679*******************9*******************98887676789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1753146IPR004330FAR1 DNA binding domain
PfamPF105512.2E-22269361IPR018289MULE transposase domain
PROSITE profilePS509669.829533581IPR007527Zinc finger, SWIM-type
PfamPF044341.7E-6555579IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-5556583IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF VGQRFVSQEA AYEFYCSFAK  60
QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPSE DGKMQRNRKS SRCGCQAYMR  120
IVKRADFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSI STDDKSRICM FAKAGMSVRQ  180
MLRLMELEKG VKLGCLPFTE IDVRNLLQSF RNVDRDNDAI DLIAMCKKMK DENPNFKYEF  240
KIDGHNRLEH IAWSYASSVQ LYEAFGDTTV FDTTHRLDAY DMLLGIWLGV DNHGMTCFFG  300
CVLLRDENIQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK EAIAVDLPQS KHAFCIWHIV  360
AKFSDWFSVL LGSRYDDWKA EFHRLFNLDF VKDFEERWRE MVNEFGLHTN KHVISLYALR  420
NFWALAYLRH CFFAEMMSTS QAESINAFIQ RFLSAQSQLD RFVEQVADIV DYNDRVGAKQ  480
KMQRKMQRVC LKTGSPIESH AASVLTPYAF GKLQEELVLA PQYASLLVDE GCFQVRHHTE  540
EDGGCKVVWI PCQGHISCSC YQFEFSGILC RHVLRVLSTN NCFHIPDQYL PTRWCNVSSS  600
STNTFETATT MKDNSEKIHL LESLASTLVT ESVETEDRLD AACEQIAMAL SRVKDLPRTT  660
HNAIDIAYNC PSESLILQDV EEADGIIRFT VGNSHESVTL GKLKERRPRD IVEISRKRRH  720
CSGPCCLSVQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223294.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223294.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_016647975.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_016647976.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A251QZE30.0A0A251QZE3_PRUPE; Uncharacterized protein
STRINGXP_008223294.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]