PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008221324.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | DBB | ||||||||
Protein Properties | Length: 306aa MW: 33207.2 Da PI: 6.9256 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.9 | 3.7e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ ++ fC+ ++ lC++C H+ H+ XP_008221324.1 4 QCDVCNKDDASVFCTADEAALCDTCDHRVHHAnklaskHQ 43 7******99*******************964446666676 PP | |||||||
2 | zf-B_box | 23.8 | 9.3e-08 | 56 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++e ++ lfC++++ lC++C l H Ht XP_008221324.1 56 PVCDICQERRAFLFCQQDRAILCRECDLPVHAAneHT 92 79**************************999556665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.879 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.66E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 7.8E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.125 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.8E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-6 | 56 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.43E-12 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MKIQCDVCNK DDASVFCTAD EAALCDTCDH RVHHANKLAS KHQRFSLIHP SSKQFPVCDI 60 CQERRAFLFC QQDRAILCRE CDLPVHAANE HTQKHSRFLL TGVKLSATST LYTSSSPPTA 120 TTSLKSADAT VTDPKPQPLI KKSVSTSSPA ISNPPSMSKN STLTTNTANS NKGGGIFVAH 180 DGVGGGSTSS ISEYLIETLP GWHVEDFLDF SSGPLGVCKA DNETVLPFLE ADLESNLSSF 240 SSEHMGIWVP QASNPMHQYS QMGGELIGFN KDGTNMKANN RTWRDDSFTV PQISPPSVGA 300 KRSRPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008221324.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008221324.1 | 0.0 | PREDICTED: B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 4e-86 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A251R932 | 0.0 | A0A251R932_PRUPE; Uncharacterized protein | ||||
STRING | XP_008221324.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-80 | salt tolerance homolog2 |