PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220566.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 575aa    MW: 65133.3 Da    PI: 5.7811
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220566.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.81.7e-29379463186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++ev+aLi +r+++e+++++   k+p Weevs+ m + g++rs+k+Ck+kwen+nk+++k+k+++kkr + + +tc+yf+ql+
  XP_008220566.1 379 RWPQSEVKALILVRSSIESKFQEPGMKGPVWEEVSALMGSMGYQRSAKRCKQKWENINKYFRKTKDSAKKR-PHNFKTCSYFNQLD 463
                     8*********************************************************************8.88889********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.783372436IPR017877Myb-like domain
PfamPF138379.0E-21378465No hitNo description
CDDcd122038.60E-27378443No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MQSNFDISEI GNQQHSMDTS NSCSPILPIF NHQKQNHHHH FNQQLEQPEP YHISHLVHPT  60
PITHDLFQRQ HLQALQQQGR LHWQLGPVNF KLGLNENSEN GESALLGAGL FDDENGDDPR  120
LLQSRMHNLG FKSWQTHEPM CWKPLDAAIP ETNRNQKEAN EGDICKDLEN KYRLYGELEA  180
IYSLAKMGEA NQTGSGSALT GENSPKNVDL PVPICDPHDL NVAPTAQVRV DNGSEASIGE  240
ESSPRKIQKR KRKRTMKKQL SSVISFFESL VKQVMDHQEN LHKKYLEVIE RMDKERRERE  300
AAWRSQEAEN HKREAIAKVH EQALASSREA LIVSYIEKIT GQRVNLPSRQ APLLLQPDNL  360
NEPPVEELTP FKIDHTNSRW PQSEVKALIL VRSSIESKFQ EPGMKGPVWE EVSALMGSMG  420
YQRSAKRCKQ KWENINKYFR KTKDSAKKRP HNFKTCSYFN QLDQLYSGTP ITAPSSSSSY  480
YSSNPSASMD DNIPKQGFSD LLEAFVAGRE AGVAHNLSSG NFEISEMGSN RLDFGGIIGG  540
KVEDVQGDLG KEKENREDDE NVDETEDTDD DDSDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244258RKIQKRKRKRTMKKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220566.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220566.10.0PREDICTED: trihelix transcription factor GTL2-like
TrEMBLM5XHC80.0M5XHC8_PRUPE; Uncharacterized protein
STRINGXP_008220566.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139981421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-48Trihelix family protein