PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220316.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 264aa    MW: 27883.9 Da    PI: 9.2676
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220316.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003112134123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k F++   L  H  +H
  XP_008220316.1 112 YKCSVCNKAFPSYQALGGHKASH 134
                     9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.951112134IPR007087Zinc finger, C2H2
SuperFamilySSF576672.81E-9112134No hitNo description
SMARTSM003550.0057112134IPR015880Zinc finger, C2H2-like
PfamPF139126.1E-14112136IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SuperFamilySSF576672.81E-9162189No hitNo description
PfamPF139122.2E-13166191IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411167189IPR007087Zinc finger, C2H2
SMARTSM003550.19167189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MALQALNSPT AAGASPFRFE EAASKINYVE PWTKRKRSKR PRLDGPSAEE EYLAICLIML  60
ARGGSGSTSA ATTATATTAT NSAASHHMIT QSPSNSSHQE PSASAQPAKL SYKCSVCNKA  120
FPSYQALGGH KASHRKGAAG SAAEGPSTSS NTTTSGTTTV TASGRTHECS ICHKSFPTGQ  180
ALGGHKRCHY EGGVGASTAT APWSTSHHAV SHGHRETFDL NMPALPEFSR DFFFSGEDEV  240
ESPHPAKKPR ILTIMKPKQE ISQN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220316.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220316.10.0PREDICTED: zinc finger protein ZAT10
RefseqXP_016647356.10.0PREDICTED: zinc finger protein ZAT10
TrEMBLM5XRA31e-143M5XRA3_PRUPE; Uncharacterized protein
STRINGXP_008220316.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-53salt tolerance zinc finger