PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219031.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 406aa    MW: 46726.8 Da    PI: 8.0981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219031.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00125678123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C++Cg + s ks+  +Hi +H
  XP_008219031.2 56 YYCEYCGICRSKKSLIASHILSH 78
                    89*******************96 PP
2zf-C2H2201.9e-06101122223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ Cg +F+ + +Lk+H+++H
  XP_008219031.2 101 TCQECGVTFRKPAHLKQHMQSH 122
                     6*******************99 PP
3zf-C2H215.93.8e-05128152123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y C+  dC+ s++rk++L+rH+  H
  XP_008219031.2 128 YICSvdDCHSSYRRKDHLNRHLLQH 152
                     89*******************9887 PP
4zf-C2H213.60.0002157182123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kCp  +C++ F  + n++rH +  H
  XP_008219031.2 157 FKCPieNCNREFGFQGNMTRHVNElH 182
                     89*******************99888 PP
5zf-C2H214.20.00013197221123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+   Cgk+F+  s L +H  +H
  XP_008219031.2 197 HVCKeiGCGKVFRFASRLWKHEDSH 221
                     79*******************9888 PP
6zf-C2H216.72.1e-05288312223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC    C + F++ksnL +H +  H
  XP_008219031.2 288 KCDynGCLRAFTTKSNLAKHVKAvH 312
                     688889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355255678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.568100127IPR007087Zinc finger, C2H2
SMARTSM003550.0049100122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-9101127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SuperFamilySSF576674.65E-11108161No hitNo description
Gene3DG3DSA:3.30.160.602.0E-9128154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0092128152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66128157IPR007087Zinc finger, C2H2
PROSITE patternPS000280130152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-4155179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.29E-6155183No hitNo description
PROSITE profilePS5015711.385157187IPR007087Zinc finger, C2H2
SMARTSM003550.026157182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280159182IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-5193221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.083197221IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64197226IPR007087Zinc finger, C2H2
PROSITE patternPS000280199221IPR007087Zinc finger, C2H2
SMARTSM003559.1229254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231254IPR007087Zinc finger, C2H2
SMARTSM0035526257278IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.1E-7270327No hitNo description
PROSITE profilePS5015712.341287317IPR007087Zinc finger, C2H2
SMARTSM003550.0031287312IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-8288311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280289312IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-4312341IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.2318344IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280320344IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MKTLDSLHCP SETSGSQSPN AVACSLVGGT FRVGALAMDK GQAEMEGPIF RDIRRYYCEY  60
CGICRSKKSL IASHILSHHK DEMEMSNVDE DREVDQKKSN TCQECGVTFR KPAHLKQHMQ  120
SHSLERPYIC SVDDCHSSYR RKDHLNRHLL QHQGKLFKCP IENCNREFGF QGNMTRHVNE  180
LHSENSPSTS GGAQKQHVCK EIGCGKVFRF ASRLWKHEDS HVKLDTVEAF CSEPGCMKHF  240
TNEQCLRAHI HSCHQHTTCE ICGTKQLRNN IKRHLLTHED KHSIEMIKCD YNGCLRAFTT  300
KSNLAKHVKA VHLEHRPFVC SFSGCGFRFA YKHVRDNHEK TGCHVYTQGD FEEADEQFRS  360
RPRGGRKREC PNIPMLVRKR VTPPNQLGQE CEYISWLHSQ EDNDEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A8e-129828120187Aart
2i13_B8e-129828120187Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219031.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219031.20.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-147TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A251RIW50.0A0A251RIW5_PRUPE; Uncharacterized protein
STRINGXP_008219031.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-149transcription factor IIIA