PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004515643.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 132aa MW: 14533.6 Da PI: 8.4706 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.3 | 6.4e-44 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk++rrkC+++Cv+apyfp ++p+kfa+vhk+FGasnv kll++++ ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l++l+ el+ XP_004515643.2 7 PCAACKIQRRKCTEECVFAPYFPPDNPQKFAYVHKVFGASNVAKLLNEVNASQREDAVKSLAYEAEARLRDPVYGCVGLISLLQHNLKSLQIELN 101 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e XP_004515643.2 102 NAKKE 106 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.785 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.0E-44 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MVPWNTPCAA CKIQRRKCTE ECVFAPYFPP DNPQKFAYVH KVFGASNVAK LLNEVNASQR 60 EDAVKSLAYE AEARLRDPVY GCVGLISLLQ HNLKSLQIEL NNAKKELASY WSSSYASSIT 120 TAAATTIFTA AA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-49 | 5 | 126 | 9 | 130 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-49 | 5 | 126 | 9 | 130 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004515643.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004515643.3 | 2e-78 | LOB domain-containing protein 36-like isoform X1 | ||||
Refseq | XP_027186721.1 | 1e-78 | LOB domain-containing protein 36-like isoform X2 | ||||
Swissprot | Q9FKZ3 | 1e-58 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A1S2Z5W9 | 4e-77 | A0A1S2Z5W9_CICAR; LOB domain-containing protein 36-like isoform X1 | ||||
TrEMBL | A0A3Q7XSB2 | 3e-77 | A0A3Q7XSB2_CICAR; LOB domain-containing protein 36-like isoform X2 | ||||
STRING | XP_004515644.1 | 5e-78 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 5e-58 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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