PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004513765.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 289aa MW: 31702.9 Da PI: 8.4981 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 224 | 246 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H ++ H XP_004513765.1 224 QCPQCGAKFSSVTTLVDHVQKsH 246 7******************9988 PP | |||||||
2 | zf-C2H2 | 16.9 | 1.7e-05 | 261 | 283 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ L+ H + H XP_004513765.1 261 VCPKCSKGFRDPVALVEHVERdH 283 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 3.53E-12 | 4 | 59 | No hit | No description |
Gene3D | G3DSA:4.10.1110.10 | 2.3E-10 | 10 | 53 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS51039 | 7.693 | 10 | 56 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 7.9E-13 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 5.9E-4 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 1.3E-10 | 90 | 159 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 4.19E-9 | 93 | 146 | No hit | No description |
PROSITE profile | PS51039 | 7.849 | 98 | 147 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 3.6E-8 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.12 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS50157 | 9.182 | 223 | 251 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.008 | 223 | 246 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.17E-5 | 224 | 279 | No hit | No description |
Pfam | PF13894 | 6.6E-4 | 224 | 246 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 225 | 246 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.725 | 260 | 288 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.4 | 260 | 283 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 262 | 283 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGTPEFPDLG KHCAVSDCKL IDFLPFTCDR CNQVYCLEHR SFIKHQCTKA DKQDVTVVIC 60 PLCAKGVRLI PDQDPNITWE NHVNTECDPS NYEKVTKKKK CPAAGCKEIL VFSNTIKCRD 120 CNVEHCLKHR FGPDHKCPGP KKLETTFSFM NLMNKNRKQE SKTKSSSTTS SSSSNWTTSF 180 LNAASNIRAS AEAGMSKLSG EINQAWGTSS NGAGKSNGSG QVEQCPQCGA KFSSVTTLVD 240 HVQKSHERSG NRSGPKVTID VCPKCSKGFR DPVALVEHVE RDHGGTSRA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004513765.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052570 | 0.0 | BT052570.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-B-14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513765.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like | ||||
Swissprot | Q0D5B9 | 1e-127 | SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | A0A1S2Z2C7 | 0.0 | A0A1S2Z2C7_CICAR; zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like | ||||
STRING | XP_004513765.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5864 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-122 | C2H2 family protein |
Publications ? help Back to Top | |||
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