PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004513076.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 365aa MW: 40701.5 Da PI: 7.6251 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.7e-07 | 130 | 150 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd C +aHg XP_004513076.1 130 ACPDFRK-GNCKKGDACEYAHG 150 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.08 | 77 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.9E-6 | 125 | 151 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.695 | 126 | 152 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-5 | 130 | 150 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 130 | 152 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.643 | 160 | 184 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 14 | 160 | 183 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MMIRANPTVH VPPWPINEDP MAEIYSSYYA DDSNAGAGDY SPYYLREALT ALQRYLPSNE 60 LDADSDSEFP GRESDSPVDA YSCDHFRMYE FKIRRCARGR SHDWTECPYA HPGEKARRRD 120 PRKFHYSGTA CPDFRKGNCK KGDACEYAHG VFECWLHPAR YRTQPCKDGT SCRRRVCFFA 180 HTPEQIRLNV QQSSRSINSP DSYDGSPLRQ LALPFMSSPV SVSPTESPTM SPKSLGSSSV 240 NEMVASLRNL QLGKMKSMPP NRNNVKIGSP GFGSPRGSVF RPGFCSLPNT PTQVSGSGRV 300 GVGYFDLWDQ SCEEEPMMER VESGRDIRAK MFEKLSKENS LGNSDPGLGQ SGGAPDVGWV 360 SELLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004513076.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513076.1 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | O82199 | 1e-136 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A1S2Z118 | 0.0 | A0A1S2Z118_CICAR; zinc finger CCCH domain-containing protein 20 | ||||
STRING | XP_004513076.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-138 | C3H family protein |
Publications ? help Back to Top | |||
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