PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511965.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 298aa    MW: 32834.6 Da    PI: 6.3629
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511965.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.54.7e-4381071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk +rrkC+++Cv+apyfp ++p++f +vhk+FGasnv+kll++l+ ++r+da++sl+yeAear+rdPvyG+vgvi+ lq++l+q + el+
  XP_004511965.1   8 PCAACKAQRRKCTQECVFAPYFPPDNPQRFTYVHKVFGASNVTKLLNELDATQRDDAVKSLAYEAEARLRDPVYGCVGVISVLQHKLRQIQGELN 102
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                      +k+e
  XP_004511965.1 103 DAKKE 107
                     99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.6637108IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-428105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTSSSNSPCA ACKAQRRKCT QECVFAPYFP PDNPQRFTYV HKVFGASNVT KLLNELDATQ  60
RDDAVKSLAY EAEARLRDPV YGCVGVISVL QHKLRQIQGE LNDAKKELAT YIGPQALHGV  120
PTNIIQQQQP NNPFVNSLYP YNNGNVAAAA QMMICDSQPP PSQHPIMEAQ QLAAALVERE  180
QQEMLRSFEH QQQQQEFLRF SGGFDVDSGS SGGGFNQMSP AAAAAVASSD QLSPSLTLGS  240
FDNTYHHMQQ VQGEPQPHHH PLQAHAQLLL PPQQKQVQTQ THQQQTESEE CRSVGPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4821245126LOB family transfactor Ramosa2.1
5ly0_B3e-4821245126LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511965.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511965.10.0LOB domain-containing protein 36-like
SwissprotQ9FKZ31e-67LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A1S2YYJ60.0A0A1S2YYJ6_CICAR; LOB domain-containing protein 36-like
STRINGXP_004511965.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23533484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.17e-63ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]