PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004510943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 23715.8 Da PI: 8.0802 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.4 | 2.8e-39 | 16 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+C++apyf ++q + +fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar rdP yG+vg+i++lqqq+++l+ael XP_004510943.1 16 PCGACKFLRRKCVKGCIFAPYFDSDQgTVHFAAVHKVFGASNASKLLMRIPSHKRLDAVVTLCYEALARSRDPLYGCVGHIFALQQQVMSLQAEL 110 7***********************9988******************************************************************* PP DUF260 95 allkee 100 +++++ XP_004510943.1 111 TYVQHS 116 **9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.008 | 15 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-38 | 16 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MDYCGGKIGG NERSGPCGAC KFLRRKCVKG CIFAPYFDSD QGTVHFAAVH KVFGASNASK 60 LLMRIPSHKR LDAVVTLCYE ALARSRDPLY GCVGHIFALQ QQVMSLQAEL TYVQHSLATM 120 QRLPISVAPS LPNPQSSSPS LHSSSSHQLG TNADLQSASN MSMHFDPFQQ LSTSLDSSSF 180 FNQSDQQPQD EELQALAREF VSRYLPGVRF QPSNSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-36 | 15 | 110 | 10 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-36 | 15 | 110 | 10 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004510943.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052556 | 0.0 | BT052556.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-F-13 unknown mRNA. | |||
GenBank | BT149077 | 0.0 | BT149077.1 Medicago truncatula clone JCVI-FLMt-11C11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510943.1 | 1e-160 | LOB domain-containing protein 19-like | ||||
Swissprot | O81322 | 1e-70 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A1S2YWB0 | 1e-158 | A0A1S2YWB0_CICAR; LOB domain-containing protein 19-like | ||||
STRING | XP_004510943.1 | 1e-159 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 8e-62 | LOB domain-containing protein 31 |