PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508679.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 657aa MW: 74898.8 Da PI: 4.6503 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 296 | 317 | 1 | 22 |
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 + C Cgk F++ + k+H ++ XP_004508679.1 296 FYCVLCGKKFKSEKQWKNHEQS 317 78*****************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.287.110 | 5.8E-23 | 4 | 76 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 1.01E-21 | 4 | 103 | IPR001623 | DnaJ domain |
SMART | SM00271 | 2.1E-20 | 6 | 69 | IPR001623 | DnaJ domain |
CDD | cd06257 | 2.80E-17 | 7 | 66 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.379 | 7 | 77 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 4.6E-20 | 8 | 74 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 3.7E-11 | 10 | 28 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 3.7E-11 | 28 | 43 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 3.7E-11 | 49 | 69 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 54 | 73 | IPR018253 | DnaJ domain, conserved site |
SuperFamily | SSF57667 | 1.54E-14 | 288 | 338 | No hit | No description |
SMART | SM00451 | 9.9E-6 | 293 | 327 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 0.27 | 296 | 320 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.182 | 296 | 325 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 9.4E-11 | 296 | 321 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 298 | 320 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.7 | 627 | 651 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.058 | 627 | 656 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 629 | 651 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 657 aa Download sequence Send to blast |
MASAKRCHYE VLGGISRDCS PEEIRSAYRK LALQRHPDKL VKSGLSQAEA TAQFQELQHA 60 YEVLSDPKER AWYDSHRSQI LFSDPNSHSN SVVPDLFSYF SNTVYSGYSD SGKGFYKVYS 120 DVFDKIQANE INFAKKLGLG IDSVRQAPLM GNLDSPYAQV TAFYSYWLGF STVMDFCWAD 180 EYDAMAGPNR KSRRLMEEEN NKVRRKAKRE YNDTVRKLAD FVKKRDKRVI DMKVKKNLEM 240 EKKKEEEREK KMKLEKEKKE RAMAYEEPEW AKVDEEEVED LFEEDEFEGK KDEKEFYCVL 300 CGKKFKSEKQ WKNHEQSKKH KEKVAQFRDS LEDEEEELEV EVEEEGGSER EGVGEERLES 360 EEDGTEVNED QVGETDCGVD DLEERIRDGL NVADEENAHG VEPNADNDDD DEIFYAPHAN 420 EGEEAGVSVD YDDNDDDNDN DENGVLETMI AGHKGRVDFD ENDGDGDDDD EIGVLEAMLA 480 GRKSRKPGAS NPKSKASVTP TQMENENESD DVGAMEYNNR KVTRKKRRAK KEKGGKNGDE 540 SHVPANGKYE NINSNGNDDS YAQESSSQNF EETEDNGGKE NEQMGRDNKK ISNKPVDKKA 600 ISKDTKTKAK ISSKGRKAKN SSKNLGHFCE TCEEEFESRN KLHKHLSDSG HAAIKSR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 523 | 530 | RKKRRAKK |
2 | 524 | 529 | KKRRAK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508679.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508679.1 | 0.0 | DNAJ protein JJJ1 homolog | ||||
Swissprot | Q9C911 | 1e-160 | JJJ1_ARATH; DNAJ protein JJJ1 homolog | ||||
TrEMBL | A0A1S2YRB0 | 0.0 | A0A1S2YRB0_CICAR; DNAJ protein JJJ1 homolog | ||||
STRING | XP_004508679.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6551 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 1e-149 | DNAJ heat shock N-terminal domain-containing protein |