PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | DBB | ||||||||
Protein Properties | Length: 243aa MW: 27062.4 Da PI: 6.2724 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.5 | 5.5e-08 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++lfC +++ lC+ C l++H+ Ht+ XP_004500780.1 4 QCDVCEKVQASLFCPSDEAALCHGCDLSIHHAnklatkHTR 44 7******88********************744478878875 PP | |||||||
2 | zf-B_box | 27.3 | 7.4e-09 | 56 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++ek+ fC++++ +C++C l++H+ Ht XP_004500780.1 56 PLCDICQEKRGYVFCQEDRAIVCRECDLSIHRAneHT 92 78*****************************768865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.623 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.99E-7 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 3.4E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.926 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.2E-13 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.11E-9 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 4.5E-7 | 56 | 92 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MKIQCDVCEK VQASLFCPSD EAALCHGCDL SIHHANKLAT KHTRFSLIHL HSKEFPLCDI 60 CQEKRGYVFC QEDRAIVCRE CDLSIHRANE HTEKHNRFLL SGVKLSSNSL DPESSSSTNI 120 IERSVSNENG SSYGNKVEEN MGSESGSVST SSISEYLIET IPGYCFEDFL DASFAPNAFC 180 KNNCSEFKDQ DIHVSKYLFP QVTCVPLAQV QSTQLTNPIP LNLPRIDSTV GVKEIPGKSR 240 HSR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU019606 | 2e-49 | CU019606.6 M.truncatula DNA sequence from clone MTH2-77H1 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500780.1 | 1e-180 | B-box zinc finger protein 20-like | ||||
Swissprot | Q9LQZ7 | 1e-55 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1S2Y9G3 | 1e-179 | A0A1S2Y9G3_CICAR; B-box zinc finger protein 20-like | ||||
STRING | XP_004500780.1 | 1e-180 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-52 | salt tolerance homolog2 |