PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500457.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 265aa MW: 29784.8 Da PI: 5.6919 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.6 | 6.6e-18 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ +r tf kR+ng+lKK EL+vLC++e++ ii++++ XP_004500457.1 11 IINQARRRATFKKRKNGLLKKIGELCVLCGIEACTIIYGENE 52 779************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.3E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.381 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.31E-30 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 2.88E-23 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-15 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MARRRVKLAY IINQARRRAT FKKRKNGLLK KIGELCVLCG IEACTIIYGE NEQEAEVWPS 60 TPGTRRVLAR FMSLPELERR KNMLDLEGFL TKSIAKTQEA CRKQMEENKK KEMSILISQF 120 IHTGEYNLGA NANLKDLNDL TELIDNNLKD VEQRIASMDL EVEQETGYRT EPMNAGVQGL 180 ETNMNHAGVQ GLETGMNNAD VQGLETNINH VGVQGPETSM NNAGVQGSET SMNHAMPTHG 240 EHWPIDFPML PFSDANMDTN GFWSI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RRRVKLAYIINQARRRATFKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500457.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500457.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1S2Y8C0 | 0.0 | A0A1S2Y8C0_CICAR; agamous-like MADS-box protein AGL80 | ||||
STRING | XP_004500457.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18162 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-37 | AGAMOUS-like 80 |