PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500453.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18955.1 Da PI: 9.1516 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.1 | 6.4e-15 | 12 | 49 | 5 | 42 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 n+s r++t+ kR++ ++KK +EL +LC+++++ i++s XP_004500453.1 12 NDSARKITYNKRKKSLMKKIKELTTLCGIDACAIVYSD 49 899*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.745 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-17 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.15E-24 | 1 | 84 | No hit | No description |
PRINTS | PR00404 | 8.4E-8 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-23 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-15 | 12 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-8 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-8 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MRNKVKLAFM INDSARKITY NKRKKSLMKK IKELTTLCGI DACAIVYSDF NSQPEVWPSP 60 WEIERIITKF KAYSEYEQGK KMLDQESFLM QRIVKSKEQL TKVEKNNSEM EQSLILFQCL 120 IRENFIYTLN TVVLNDLACV INEKLKGISL REDELDKNAS TI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500453.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500453.1 | 1e-116 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1S2Y772 | 1e-114 | A0A1S2Y772_CICAR; agamous-like MADS-box protein AGL80 | ||||
STRING | XP_004500453.1 | 1e-115 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16302 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-45 | AGAMOUS-like 80 |