PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500327.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 502aa    MW: 56294.7 Da    PI: 8.3126
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.5e-33198256260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve+ + d++++ei+Y+g+Hnh+k
  XP_004500327.1 198 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVEKRSLDGQITEIVYKGNHNHPK 256
                     8********************************************************85 PP
2WRKY106.51.4e-33356414159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+
  XP_004500327.1 356 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASQDLRAVITTYEGKHNHD 414
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28189257IPR003657WRKY domain
SuperFamilySSF1182901.01E-25196257IPR003657WRKY domain
SMARTSM007748.2E-36197256IPR003657WRKY domain
PfamPF031063.5E-25198255IPR003657WRKY domain
PROSITE profilePS5081125.97198257IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-37341416IPR003657WRKY domain
SuperFamilySSF1182903.14E-29348416IPR003657WRKY domain
PROSITE profilePS5081138.136351416IPR003657WRKY domain
SMARTSM007743.2E-39356415IPR003657WRKY domain
PfamPF031065.0E-26357414IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MTSSSFSDIL NSPTHQNLGD TEKLLLHHHH VLSDQTGSGV PKFKSIPPPS LPLSPTSLFS  60
PSSYFSIPPG FSLSELLDSP VLLNSSHIFP SPTTGSFANN NQGFNWKNNY GEKQHNIKAE  120
DANFSFQTKP ELQSLTGWSY EETNKQDGFS SMVKTENSSS IQSFIPPENN HKRNSQSNYK  180
NYNQQPQQQV QTLSRRSDDG YNWRKYGQKQ VKGSENPRSY YKCTYPNCPT KKKVEKRSLD  240
GQITEIVYKG NHNHPKPQAN KRNNNSTSLA NPSSNHFSSE IQIDLVATPD NSSISMGGDD  300
DFEQSSHVSV GDHEDEPDAK RWRIEGENEG ISGGVGNRTV REPRVVVQTT SDIDILDDGY  360
RWRKYGQKVV KGNPNPRSYY KCTNPGCPVR KHVERASQDL RAVITTYEGK HNHDVPAPRG  420
SGNHSINKPI PMPTNNNTIH ANNAMINNSL INNGFFNQGS FNGSFPMNHS YMNTNQQRVN  480
IVRGRAKEEP TEDDSFFESL LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-35190417878Probable WRKY transcription factor 4
2lex_A4e-35190417878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500327.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500327.10.0probable WRKY transcription factor 26
SwissprotQ6B6R41e-119WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1S2Y6U90.0A0A1S2Y6U9_CICAR; probable WRKY transcription factor 26
STRINGXP_004500327.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-103WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]