PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004499688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB_related | ||||||||
Protein Properties | Length: 623aa MW: 72174.2 Da PI: 8.7782 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.3 | 3.1e-07 | 414 | 458 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r rWT++E e + + + +G++ W+ Ia +g +++ q+k+ w+ ++ XP_004499688.1 414 RCRWTPDELEFIRKSQEIHGSD-WRPIADALG--KSRFQVKDAWRRLK 458 679*******************.********8..8*******999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-6 | 340 | 404 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-5 | 340 | 411 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00724 | 343 | 404 | No hit | No description |
PROSITE profile | PS50090 | 4.484 | 343 | 404 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.26E-9 | 388 | 470 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.841 | 409 | 458 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.6E-6 | 413 | 460 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.72E-4 | 416 | 458 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 416 | 468 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 4.9E-10 | 417 | 475 | No hit | No description |
PROSITE profile | PS50090 | 6.829 | 459 | 528 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.4 | 463 | 530 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-5 | 469 | 528 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.934 | 530 | 583 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MKALSKKNKR TKDEEGETNG VDNVVDLPLA KSNDDLHLVK SNKSEDDEQG KKMKKKKKKL 60 SEKRKHKEYN EFQSNACESD DQGKMKKKIR LCDEKKLKEG DDFRINDGED GEEGKKIKKK 120 KKKRSEESKH KEYNEIESNE GEDGKQGKKI KKKKRSEESR DKVCNEIKSN ECEDDDQGNK 180 MKKEKLIEGS KLNECNDFRS SEGNDGVQDK KKKKKKKLSE ESIHKEHDKF KSNECGDDGH 240 GKKKKKKKKK KSIEGEDDGD QGKTMKKKEL NHNSKSMESN DFNSNDSDAK ANDQGKKRKK 300 KKVAESVTGE TPKSSKGRPW KPKRVTFSDQ VEFCCDGLLR GKRFTPEEDE KIKAAVNDYI 360 DSHCLGENGL DMILHCGSHP EIRGCWKEIA EVLPERPVRS VYERGHVLLE NGQRCRWTPD 420 ELEFIRKSQE IHGSDWRPIA DALGKSRFQV KDAWRRLKFT NLKQGQWSQD EYQTLFDLVN 480 LDLRTRATEP YRKSMHGMLR DNISWEAIGN KLSTRNSSFC CKKWYEQLTT PLVASGEWCD 540 TDDYRLISTL YTLDACCRDD VEWDDLLEHR SGDVCRLRWD QMVQHIGEHA GKSFIEQVEV 600 LAKRFCPDLL EAREAFDNKP VIC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 208 | 217 | DKKKKKKKKL |
2 | 241 | 250 | KKKKKKKKKK |
3 | 242 | 250 | KKKKKKKKK |
4 | 295 | 299 | KKRKK |
5 | 295 | 301 | KKRKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004499688.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499688.1 | 0.0 | cyclin-D-binding Myb-like transcription factor 1 | ||||
TrEMBL | A0A1S2Y784 | 0.0 | A0A1S2Y784_CICAR; cyclin-D-binding Myb-like transcription factor 1 | ||||
STRING | XP_004499688.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6704 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-115 | MYB_related family protein |