PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004499213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | DBB | ||||||||
Protein Properties | Length: 270aa MW: 29548.1 Da PI: 6.4216 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.4 | 2.5e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++++ +++fC+ ++ lC +C H+ H++ XP_004499213.1 4 LCDVCNNHDASFFCTADEAALCLSCDHRVHHAnklaskHNRL 45 6******9********************96444778788765 PP | |||||||
2 | zf-B_box | 20.4 | 1.1e-06 | 56 | 95 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ +++ ++ C++++ lC+ C +++H+ H XP_004499213.1 56 PLCDICQDRRAFVLCKQDRAILCNHCDSSIHSVneftvnH 95 68*****************************434555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.291 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.5E-6 | 3 | 46 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.67E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 3.2E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.93 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.5E-9 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.37E-6 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 2.0E-5 | 56 | 96 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MKILCDVCNN HDASFFCTAD EAALCLSCDH RVHHANKLAS KHNRLSLLHP SPNLSPLCDI 60 CQDRRAFVLC KQDRAILCNH CDSSIHSVNE FTVNHDRFLL AGVKLSTISS SLTSSSSTNS 120 KSNLVDSSSL IDKSVVVPSS TSIIHNDALE GTVSGGSTIS QYLIETLPGW QVDDFLDSSS 180 VPFAFSKGDD LFDGGIEQNL DSIFPNSNMG IWVPQAPPTP LYSSSQIMMG QSETKKGNNR 240 TRLRDDHDGS VFTVPQISPV SNSKRSRYLW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004499213.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT051898 | 9e-74 | BT051898.1 Medicago truncatula clone MTYF5_F6_F7_F81G-E-22 unknown mRNA. | |||
GenBank | BT143086 | 9e-74 | BT143086.1 Medicago truncatula clone JCVI-FLMt-11J17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499213.1 | 0.0 | B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 2e-69 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1S2Y6B0 | 0.0 | A0A1S2Y6B0_CICAR; B-box zinc finger protein 21 | ||||
STRING | XP_004499213.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 7e-58 | salt tolerance homolog2 |