PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499104.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 436aa    MW: 48925.9 Da    PI: 6.8367
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499104.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.43.5e-20281101098
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +++l lpk+f ++ ++k   +  +tl+ +sg  W++ l  + ++g+ ++t+GW++Fvk++ Lke+Df+vFk++g+s f   v +f+
  XP_004499104.1  28 KDYHQQLELPKTFSDNVKKK--LPENVTLKGPSGVMWDIGL--TTRDGMAYFTNGWQQFVKDHSLKENDFLVFKYNGESLF--EVLIFD 110
                     4456789******9666644..7789***************..********************************998888..788776 PP
2B336.31e-11304387388
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                      ++ ps+v k+  +++p+k + ++ ++  +s++++l+  +  +W  k++y + ++   lt+GWk F+ +n+L+e D+++Fk +g+ +
  XP_004499104.1 304 VTMRPSHVYKRFYVSFPNKWILSYISP--SSQEVILRMGE-GEWIAKYCYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPSGHlM 387
                     5789*****************999655..67789988855.68*******77777778***********************777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.61E-2417110IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-1919112IPR003340B3 DNA binding domain
PROSITE profilePS5086315.93319112IPR003340B3 DNA binding domain
CDDcd100171.99E-2021110No hitNo description
Gene3DG3DSA:2.40.330.101.3E-2321110IPR015300DNA-binding pseudobarrel domain
PfamPF023623.2E-1727110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-16298385IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-14300385IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-14301384No hitNo description
PROSITE profilePS508639.164302400IPR003340B3 DNA binding domain
SMARTSM010190.0011302400IPR003340B3 DNA binding domain
PfamPF023624.0E-10304388IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MGSGCRSWEE NIYWTHFQFV HFTQFLHKDY HQQLELPKTF SDNVKKKLPE NVTLKGPSGV  60
MWDIGLTTRD GMAYFTNGWQ QFVKDHSLKE NDFLVFKYNG ESLFEVLIFD GESFCEKAGP  120
YFVRKCGQAA AQTEQGGGCS SKRRETDNSV EEVNTPSNGG DEGDSPEKSA HLNGIQVPFV  180
APSNTPNGKT SNAGVESSGP EQEMEDAVNE TDPTADPSQT NGKRVRKSVY AATPVQIKRR  240
GRPPKPSNSQ GRALNWVADA EHSPKCRSGT CELYTSNRRP VTQNEIENTL LLAQAACTNE  300
CLLVTMRPSH VYKRFYVSFP NKWILSYISP SSQEVILRMG EGEWIAKYCY HNIRNNGGLT  360
GGWKYFALDN NLEEFDVCLF KPSGHLMDRL IIEMSIFRVV EEITPLTAMS SPGRKRGVKR  420
RVTSSVQTEL ESIEGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415420RGVKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499104.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499104.20.0B3 domain-containing protein REM16-like
TrEMBLA0A1S2Y6230.0A0A1S2Y623_CICAR; B3 domain-containing protein REM16-like
STRINGXP_004499104.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-44B3 family protein