PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004499103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | B3 | ||||||||
Protein Properties | Length: 222aa MW: 25449.7 Da PI: 7.7971 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.9 | 5e-20 | 35 | 116 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++rl lp +f h+ kk+ +++++l+ +sg +W++ l + +++ +++++GW++F+k++ Lke+Df+vFk++g+s f v vf++ XP_004499103.1 35 FHQRLALPQTFS--HNVKKKLPQDVSLKGPSGAVWNIML--TTRDDIVYFADGWQQFAKDHALKENDFLVFKYNGESVF--EVLVFDR 116 4678*******7..545566999****************..999999****************************9999..8888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.16E-23 | 23 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.636 | 24 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-23 | 25 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.71E-19 | 26 | 115 | No hit | No description |
SMART | SM01019 | 1.3E-16 | 27 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-16 | 36 | 116 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGGEQNINIK SSWEQDIYWN HFQFNHFVQF LTKDFHQRLA LPQTFSHNVK KKLPQDVSLK 60 GPSGAVWNIM LTTRDDIVYF ADGWQQFAKD HALKENDFLV FKYNGESVFE VLVFDRESLC 120 EKATSYFVGK YKGCCCKEKD TNNISNAGVE CGSPATLVHL NNIAEPSKTT KGKTSNDHVE 180 SCPKEFMPDA VTKTRTQKKR GRPPKVSNSF DDEFGDLFRE RC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004499103.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499104.2 | 1e-103 | B3 domain-containing protein REM16-like | ||||
TrEMBL | A0A1S2Y623 | 1e-102 | A0A1S2Y623_CICAR; B3 domain-containing protein REM16-like | ||||
STRING | XP_004499103.1 | 1e-167 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-42 | B3 family protein |