PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496404.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 558aa    MW: 63000.3 Da    PI: 4.3696
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.53.7e-51201462128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +pGfrFhPtdeelv+++Lk+k+ gkkl++ +vi e+d+yk++P+dLp +  +k++++ w+fF++rd+ky++g r+nrat++gyWkatgkd++++ 
  XP_004496404.1  20 MPGFRFHPTDEELVMYFLKRKICGKKLKF-NVICETDVYKWDPEDLPgQsFLKTGDRVWFFFCHRDRKYPNGARSNRATRHGYWKATGKDRNIIF 113
                     69**************************9.99**************96347788999************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vg+kktLvfy grap+ge+tdWvmhey++
  XP_004496404.1 114 -NSRSVGVKKTLVFYVGRAPNGERTDWVMHEYTM 146
                     .999****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5815169IPR003441NAC domain
PROSITE profilePS5100553.08519169IPR003441NAC domain
PfamPF023659.3E-2721145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MGAVSESASA DCFSEVMSSM PGFRFHPTDE ELVMYFLKRK ICGKKLKFNV ICETDVYKWD  60
PEDLPGQSFL KTGDRVWFFF CHRDRKYPNG ARSNRATRHG YWKATGKDRN IIFNSRSVGV  120
KKTLVFYVGR APNGERTDWV MHEYTMDEEE LKRCRDVKDY YALYKVFKKS GPGPKNGEQY  180
GAPFKEEDWA DDDDVAFKIN SPEKEAPNAV IDPLNGQMQP LFDDEIDEII KEIFDVEPVP  240
DQQYVNGYVD FPQVVGEETQ SMILGQFSEA VIFPEASGEL QSCSQYYDVQ PSFDFNQSIA  300
SPLHFSESPE LASAPDIESD FQEDGFLEIN DLIDTEPTFS NTEKPVENLQ FEDGLSEFDL  360
HQDGEMLLRE LGPVTGEPVS RAYMNNIGNN IENQSYQLTP YPEDTNQMVD EFWMHFERNT  420
LSPAEGYADS FSLTNPGVVC DSVSFPSEST ENRRSTVEDV STTSRFSSAL WAFVESIPTT  480
PASAAENPLV GRALNRMSSF SRVKIKPTNI AAGNDTATVK RAGRKGVSFL FFPILIALCA  540
FLWVSIGNLR LLGRCISP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-452114617140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496404.10.0NAC domain-containing protein 16
TrEMBLA0A1S2XY720.0A0A1S2XY72_CICAR; NAC domain-containing protein 16
STRINGXP_004496404.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.11e-131NAC domain containing protein 16