PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 558aa MW: 63000.3 Da PI: 4.3696 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.5 | 3.7e-51 | 20 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrFhPtdeelv+++Lk+k+ gkkl++ +vi e+d+yk++P+dLp + +k++++ w+fF++rd+ky++g r+nrat++gyWkatgkd++++ XP_004496404.1 20 MPGFRFHPTDEELVMYFLKRKICGKKLKF-NVICETDVYKWDPEDLPgQsFLKTGDRVWFFFCHRDRKYPNGARSNRATRHGYWKATGKDRNIIF 113 69**************************9.99**************96347788999************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kktLvfy grap+ge+tdWvmhey++ XP_004496404.1 114 -NSRSVGVKKTLVFYVGRAPNGERTDWVMHEYTM 146 .999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-58 | 15 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.085 | 19 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.3E-27 | 21 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MGAVSESASA DCFSEVMSSM PGFRFHPTDE ELVMYFLKRK ICGKKLKFNV ICETDVYKWD 60 PEDLPGQSFL KTGDRVWFFF CHRDRKYPNG ARSNRATRHG YWKATGKDRN IIFNSRSVGV 120 KKTLVFYVGR APNGERTDWV MHEYTMDEEE LKRCRDVKDY YALYKVFKKS GPGPKNGEQY 180 GAPFKEEDWA DDDDVAFKIN SPEKEAPNAV IDPLNGQMQP LFDDEIDEII KEIFDVEPVP 240 DQQYVNGYVD FPQVVGEETQ SMILGQFSEA VIFPEASGEL QSCSQYYDVQ PSFDFNQSIA 300 SPLHFSESPE LASAPDIESD FQEDGFLEIN DLIDTEPTFS NTEKPVENLQ FEDGLSEFDL 360 HQDGEMLLRE LGPVTGEPVS RAYMNNIGNN IENQSYQLTP YPEDTNQMVD EFWMHFERNT 420 LSPAEGYADS FSLTNPGVVC DSVSFPSEST ENRRSTVEDV STTSRFSSAL WAFVESIPTT 480 PASAAENPLV GRALNRMSSF SRVKIKPTNI AAGNDTATVK RAGRKGVSFL FFPILIALCA 540 FLWVSIGNLR LLGRCISP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-45 | 21 | 146 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496404.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496404.1 | 0.0 | NAC domain-containing protein 16 | ||||
TrEMBL | A0A1S2XY72 | 0.0 | A0A1S2XY72_CICAR; NAC domain-containing protein 16 | ||||
STRING | XP_004496404.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 1e-131 | NAC domain containing protein 16 |