PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 157aa MW: 18079 Da PI: 10.0881 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.1 | 2.6e-14 | 10 | 48 | 2 | 40 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +i+++s r+ t+ kR++gi+KK +EL +LC++ ++ ii XP_004496032.1 10 FISDDSARKATYKKRKKGIIKKVSELTILCGIPACAIIS 48 89*********************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.2E-19 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-22 | 1 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.544 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-14 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MTRKKVKLAF ISDDSARKAT YKKRKKGIIK KVSELTILCG IPACAIISNP FDSQTEVWPD 60 PEGAKHVIER YQKSSVIDET KNVNQESFLL QRIVKARDQL KKQRLENHEK DLTILMFGYM 120 QTKNLPDHLT VAELKDFDKL IHKNLKEIDN QIATTLA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAFISDDSARKATYKKRK |
2 | 21 | 25 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496032.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496032.1 | 1e-113 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1S2XZB5 | 1e-112 | A0A1S2XZB5_CICAR; agamous-like MADS-box protein AGL80 | ||||
STRING | XP_004496032.1 | 1e-112 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13237 | 9 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 1e-33 | M-type_MADS family protein |