PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004493938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | AP2 | ||||||||
Protein Properties | Length: 466aa MW: 51441.9 Da PI: 6.1392 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 5.8e-17 | 139 | 188 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_004493938.1 139 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 188 78*******************......55************************997 PP | |||||||
2 | AP2 | 40.1 | 9e-13 | 231 | 281 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ +Aa+a+++a+ k +g XP_004493938.1 231 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELDAARAYDKAAIKCNG 281 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.3E-9 | 139 | 188 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-16 | 139 | 198 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-17 | 140 | 197 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-32 | 140 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.90E-12 | 140 | 198 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 140 | 196 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-16 | 231 | 290 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.94E-25 | 231 | 291 | No hit | No description |
Pfam | PF00847 | 4.4E-8 | 231 | 281 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.435 | 232 | 289 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-15 | 232 | 290 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-31 | 232 | 295 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-6 | 233 | 244 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-6 | 271 | 291 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MLDLNLNADS AFDNYTLPLS AAQMESSGSF DSSVVNTADT EDSCSYGDAY AYNFAILNNN 60 STIDNATISG ELQLSTAGEA GVRTIQLFPA NETGISPSES EGWLKFSSDH HGGVPEQTVV 120 APRPQQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD 180 RAAIKFRGVD ADINFNVSDY DDDIKQMSNF TKEEFVHILR RQSTGFSRGS SKYRGVTLHK 240 CGRWEARMGQ FLGKKYIYLG LFDSELDAAR AYDKAAIKCN GREAVTNFEA SSYEGELLSQ 300 SDNKDGKRNL DLNLGIAPPS NSDDQMMNMH HSGSGLQVQR SWDDMPVDKS VMFEDSGSIS 360 LNGQPSYGFS MPSNLFPMCK ERAIENRMEA ASVPKWAWQL QSPYNGSTLI PPFSAAAASS 420 GFPSPTTVPS SAADSQIHYP NMTFLHPHFP PPMTNSTNIS PFYCRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004493938.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493938.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like | ||||
Swissprot | B8AMA9 | 1e-106 | AP22_ORYSI; APETALA2-like protein 2 | ||||
TrEMBL | A0A1S2XSQ6 | 0.0 | A0A1S2XSQ6_CICAR; ethylene-responsive transcription factor RAP2-7-like | ||||
STRING | XP_004493938.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10581 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-107 | related to AP2.7 |