PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004492662.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 182aa MW: 20303.2 Da PI: 7.8833 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.6 | 3e-36 | 11 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakd.Cvlapyfpa..eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+kd C++apyf + e +++fa++hk+FGasn +kll ++p ++r da+ sl+yeA ar+ dPvyG+v++i++lqqq+ +l+a XP_004492662.2 11 PCGACKFLRRKCVKDsCIFAPYFESsvEGTAHFAAIHKVFGASNASKLLMQIPLHKRLDAVLSLCYEALARVTDPVYGCVAHIFALQQQVVKLQA 105 7***********9988*******7733558***************************************************************** PP DUF260 93 elallkee 100 ela+++++ XP_004492662.2 106 ELAHAQAR 113 ***99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.128 | 10 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-35 | 11 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MEFECGRSGG PCGACKFLRR KCVKDSCIFA PYFESSVEGT AHFAAIHKVF GASNASKLLM 60 QIPLHKRLDA VLSLCYEALA RVTDPVYGCV AHIFALQQQV VKLQAELAHA QARLSILKRI 120 SIDPQFQHPQ SSSLSPNQHS SLLDHRHHHV SSNNEINDYM SMHFDNHHPT PFDITNLLNP 180 SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-35 | 8 | 114 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-35 | 8 | 114 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004492662.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004492662.3 | 1e-134 | LOW QUALITY PROTEIN: LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 8e-55 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A1S2XPU6 | 1e-132 | A0A1S2XPU6_CICAR; LOW QUALITY PROTEIN: LOB domain-containing protein 19 | ||||
STRING | XP_004492662.1 | 1e-133 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 6e-57 | LOB domain-containing protein 31 |