PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490681.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 575aa    MW: 63702.1 Da    PI: 6.3838
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490681.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.4e-33237294260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  +++++ei+Y+g+Hnh+k
  XP_004490681.1 237 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSI-EGQITEIVYKGTHNHPK 294
                     8****************************************.***************85 PP
2WRKY106.71.2e-33411469159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  XP_004490681.1 411 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 469
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27228295IPR003657WRKY domain
SuperFamilySSF1182903.79E-25235295IPR003657WRKY domain
SMARTSM007747.0E-35236294IPR003657WRKY domain
PfamPF031062.3E-25237293IPR003657WRKY domain
PROSITE profilePS5081123.215237295IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.6E-38396471IPR003657WRKY domain
SuperFamilySSF1182901.19E-29403471IPR003657WRKY domain
PROSITE profilePS5081138.147406471IPR003657WRKY domain
SMARTSM007741.2E-39411470IPR003657WRKY domain
PfamPF031065.0E-26412469IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MASSSSSLEN NNNSLNSFNN FTFSTHPFMT TSFSDLLASP IDDNKLRGES GFGDRGVPKF  60
KSTPPPSLPL TPPSVSPSNY FSIPPGLSPA QLLDSPVLLN SSNILPSPTT GAFSAQSYNW  120
RNNSEGNQQI VNEENKSFSN FSFQTQQGPP GNASTTNFES STIRVQQEQP WSYQEGNKQD  180
GFSSGNNMIQ TENNNSSMQS FSPEISNVQT NNNNGFQSDY TNNNQSQQPQ TLSKKSDDGY  240
NWRKYGQKQV KGSENPRSYY KCTYPNCPTK KKVERSIEGQ ITEIVYKGTH NHPKPQSTRR  300
NSSNSLVIVP VNPIISNEIH DQSYAMHGNG QLDSGTTPEN SSISIGDDDF EQSSQKCKSG  360
GGGDEYDNED EPDAKRWRVE GENEEGISAS GSRTVREPRV VVQTTSDIDI LDDGYRWRKY  420
GQKVVKGNPN PRSYYKCTHP GCPVRKHVER ASHDLRAVIT TYEGKHNHDV PAARGSGSQA  480
VNRPMPNNHS NSNIAAAAAI RPLQTIQSQR PSAQSPFNPE MIQGQGNYGY SGFENSMDSY  540
MNHRQQQQQQ ISENGFSSRA KDEPKDDMFL ESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-34237472878Probable WRKY transcription factor 4
2lex_A5e-34237472878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490681.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490681.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-138WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1S2XKG50.0A0A1S2XKG5_CICAR; WRKY transcription factor WRKY24
STRINGXP_004490681.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-101WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]